Conservation of cofitness between CSW01_06875 and CSW01_00450 in Vibrio cholerae E7946 ATCC 55056

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06875 7-cyano-7-deazaguanine synthase QueC 1.0 CSW01_00450 SCP2 domain-containing protein 0.62 10
Shewanella amazonensis SB2B 0.76 Sama_1826 ExsB protein (RefSeq) 0.23 Sama_3203 hypothetical protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.72 SO2503 exsB exsB protein (NCBI ptt file) 0.28 SO4200 conserved hypothetical protein (NCBI ptt file) — —
Shewanella loihica PV-4 0.72 Shew_2062 exsB protein (RefSeq) 0.31 Shew_3374 hypothetical protein (RefSeq) — —
Pseudomonas orientalis W4I3 0.72 QF045_RS25625 7-cyano-7-deazaguanine synthase QueC 0.12 QF045_RS04925 SCP2 domain-containing protein low > 93
Shewanella sp. ANA-3 0.72 Shewana3_2164 queuosine biosynthesis protein QueC (RefSeq) 0.26 Shewana3_3726 hypothetical protein (RefSeq) — —
Pantoea sp. MT58 0.72 IAI47_14620 7-cyano-7-deazaguanine synthase QueC 0.33 IAI47_18280 SCP2 domain-containing protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03229 7-cyano-7-deazaguanine synthase 0.34 OHPLBJKB_04217 hypothetical protein low > 74
Escherichia coli ECOR38 0.71 HEPCGN_06910 queC 7-cyano-7-deazaguanine synthase QueC 0.33 HEPCGN_12930 ubiJ ubiquinone biosynthesis protein UbiJ low > 88
Escherichia coli Nissle 1917 0.71 ECOLIN_RS02660 7-cyano-7-deazaguanine synthase QueC 0.33 ECOLIN_RS22120 ubiquinone biosynthesis protein UbiJ low > 55
Escherichia fergusonii Becca 0.71 EFB2_03613 7-cyano-7-deazaguanine synthase 0.33 EFB2_04781 Ubiquinone biosynthesis accessory factor UbiJ low > 86
Escherichia coli ECRC62 0.71 BNILDI_22645 queC 7-cyano-7-deazaguanine synthase QueC 0.34 BNILDI_05100 ubiJ ubiquinone biosynthesis protein UbiJ — —
Escherichia coli ECOR27 0.71 NOLOHH_01230 queC 7-cyano-7-deazaguanine synthase QueC 0.34 NOLOHH_06430 ubiJ ubiquinone biosynthesis protein UbiJ — —
Escherichia coli BW25113 0.71 b0444 ybaX predicted aluminum resistance protein (NCBI) 0.34 b3834 yigP hypothetical protein (NCBI) low > 76
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3734 Queuosine Biosynthesis QueC ATPase 0.12 Pf6N2E2_3780 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes — —
Escherichia coli ECRC99 0.70 KEDOAH_19670 queC 7-cyano-7-deazaguanine synthase QueC 0.33 KEDOAH_13850 ubiJ ubiquinone biosynthesis protein UbiJ — —
Escherichia coli ECRC98 0.70 JDDGAC_11950 queC 7-cyano-7-deazaguanine synthase QueC 0.33 JDDGAC_17925 ubiJ ubiquinone biosynthesis protein UbiJ — —
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_1527 Queuosine Biosynthesis QueC ATPase 0.12 Pf1N1B4_1563 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes — —
Escherichia coli BL21 0.70 ECD_00396 7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis 0.34 ECD_03727 aerobic ubiquinone synthesis protein, SCP2 family protein low > 61
Escherichia coli ECRC101 0.70 MCAODC_27520 queC 7-cyano-7-deazaguanine synthase QueC 0.33 MCAODC_04805 ubiJ ubiquinone biosynthesis protein UbiJ — —
Escherichia coli ECRC102 0.70 NIAGMN_06350 queC 7-cyano-7-deazaguanine synthase QueC 0.33 NIAGMN_12055 ubiJ ubiquinone biosynthesis protein UbiJ — —
Escherichia coli ECRC100 0.70 OKFHMN_08295 queC 7-cyano-7-deazaguanine synthase QueC 0.33 OKFHMN_14300 ubiJ ubiquinone biosynthesis protein UbiJ — —
Serratia liquefaciens MT49 0.70 IAI46_05045 7-cyano-7-deazaguanine synthase QueC 0.34 IAI46_01070 SCP2 domain-containing protein low > 87
Klebsiella michiganensis M5al 0.70 BWI76_RS06560 7-cyano-7-deazaguanine synthase QueC 0.35 BWI76_RS01310 SCP2 domain-containing protein — —
Rahnella sp. WP5 0.70 EX31_RS22280 7-cyano-7-deazaguanine synthase QueC 0.34 EX31_RS14620 SCP2 domain-containing protein low > 89
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13505_RS10575 7-cyano-7-deazaguanine synthase QueC 0.35 PagCFBP13505_RS15260 SCP2 domain-containing protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.70 GFF4360 Queuosine Biosynthesis QueC ATPase 0.35 GFF261 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes low > 78
Enterobacter sp. TBS_079 0.69 MPMX20_01035 7-cyano-7-deazaguanine synthase 0.35 MPMX20_04446 Ubiquinone biosynthesis accessory factor UbiJ — —
Klebsiella pneumoniae MKP103 0.69 KDGMDA_14645 7-cyano-7-deazaguanine synthase QueC 0.35 KDGMDA_09800 Ubiquinone biosynthesis accessory factor UbiJ — —
Enterobacter asburiae PDN3 0.69 EX28DRAFT_2526 queuosine biosynthesis protein QueC 0.35 EX28DRAFT_4499 Uncharacterized protein conserved in bacteria low > 76
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_16475 queC 7-cyano-7-deazaguanine synthase QueC 0.33 IJEDHG_08645 Ubiquinone biosynthesis accessory factor UbiJ — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS15815 7-cyano-7-deazaguanine synthase QueC 0.28 HER17_RS20605 SCP2 domain-containing protein — —
Erwinia tracheiphila SCR3 0.69 LU632_RS18310 queC 7-cyano-7-deazaguanine synthase QueC 0.33 LU632_RS24000 SCP2 domain-containing protein — —
Erwinia amylovora T8 0.68 OLJFJH_17935 7-cyano-7-deazaguanine synthase QueC 0.35 OLJFJH_06505 Ubiquinone biosynthesis accessory factor UbiJ — —
Dickeya dadantii 3937 0.68 DDA3937_RS05670 7-cyano-7-deazaguanine synthase QueC 0.36 DDA3937_RS20325 SCP2 domain-containing protein — —
Dickeya dianthicola 67-19 0.67 HGI48_RS05715 7-cyano-7-deazaguanine synthase QueC 0.36 HGI48_RS00900 SCP2 domain-containing protein — —
Dickeya dianthicola ME23 0.67 DZA65_RS06040 7-cyano-7-deazaguanine synthase QueC 0.36 DZA65_RS00960 SCP2 domain-containing protein — —
Castellaniella sp019104865 MT123 0.41 ABCV34_RS10950 7-cyano-7-deazaguanine synthase QueC 0.14 ABCV34_RS14485 SCP2 sterol-binding domain-containing protein low > 48
Pseudomonas stutzeri RCH2 0.30 Psest_1506 queuosine biosynthesis protein QueC 0.15 Psest_3941 Uncharacterized protein conserved in bacteria — —
Pseudomonas segetis P6 0.29 ACVTMO_RS08405 queC 7-cyano-7-deazaguanine synthase QueC 0.14 ACVTMO_RS21120 ubiquinone biosynthesis accessory factor UbiJ — —
Pseudomonas sp. RS175 0.29 PFR28_03403 7-cyano-7-deazaguanine synthase 0.12 PFR28_04988 Ubiquinone biosynthesis accessory factor UbiJ — —
Alteromonas macleodii MIT1002 0.29 MIT1002_01263 7-cyano-7-deazaguanine synthase 0.26 MIT1002_03630 SCP-2 sterol transfer family protein — —
Lysobacter sp. OAE881 0.28 ABIE51_RS05105 7-cyano-7-deazaguanine synthase QueC 0.15 ABIE51_RS00225 SCP2 sterol-binding domain-containing protein low > 62
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_1862 Queuosine Biosynthesis QueC ATPase 0.12 PfGW456L13_300 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes — —
Pseudomonas sp. BP01 0.28 JOY50_RS01770 queC 7-cyano-7-deazaguanine synthase QueC 0.12 JOY50_RS09630 SCP2 domain-containing protein 0.31 62
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.1450.1 Queuosine Biosynthesis QueC ATPase 0.14 Xcc-8004.294.1 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes — —
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_1146 preQ(0) biosynthesis protein QueC 0.20 B158DRAFT_0743 Uncharacterized protein conserved in bacteria low > 40
Pseudomonas simiae WCS417 0.28 PS417_22400 7-cyano-7-deazaguanine synthase 0.13 PS417_01865 sterol-binding protein — —
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.12 PFLU_RS01910 sterol-binding protein low > 109
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS10785 7-cyano-7-deazaguanine synthase QueC 0.17 ABZR86_RS13450 SCP2 sterol-binding domain-containing protein — —
Pseudomonas fluorescens SBW25 0.27 PFLU_RS24040 7-cyano-7-deazaguanine synthase QueC 0.12 PFLU_RS01910 sterol-binding protein low > 109
Ralstonia solanacearum GMI1000 0.27 RS_RS03715 7-cyano-7-deazaguanine synthase 0.12 RS_RS02280 SCP2 domain-containing protein — —
Rhodanobacter denitrificans MT42 0.26 LRK55_RS04635 7-cyano-7-deazaguanine synthase QueC 0.19 LRK55_RS10280 SCP2 sterol-binding domain-containing protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.26 LRK54_RS04855 7-cyano-7-deazaguanine synthase QueC 0.20 LRK54_RS10640 SCP2 sterol-binding domain-containing protein low > 59
Rhodanobacter sp000427505 FW510-R12 0.26 LRK53_RS05175 7-cyano-7-deazaguanine synthase QueC 0.19 LRK53_RS03410 SCP2 sterol-binding domain-containing protein low > 59
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_01895 queC 7-cyano-7-deazaguanine synthase QueC 0.20 OKGIIK_13260 ubiJ sterol-binding protein — —
Marinobacter adhaerens HP15 0.25 HP15_3814 ExsB protein 0.12 HP15_3192 protein containing sterol-binding domain low > 73

Not shown: 56 genomes with orthologs for CSW01_06875 only; 0 genomes with orthologs for CSW01_00450 only