| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 1.0 | CSW01_00450 | | SCP2 domain-containing protein | 0.84 | 4 |
| Dickeya dadantii 3937 | 0.62 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | 0.36 | DDA3937_RS20325 | | SCP2 domain-containing protein | — | — |
| Dickeya dianthicola 67-19 | 0.61 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | 0.36 | HGI48_RS00900 | | SCP2 domain-containing protein | — | — |
| Dickeya dianthicola ME23 | 0.61 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | 0.36 | DZA65_RS00960 | | SCP2 domain-containing protein | — | — |
| Pectobacterium carotovorum WPP14 | 0.61 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | 0.28 | HER17_RS20605 | | SCP2 domain-containing protein | — | — |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | 0.35 | BWI76_RS01310 | | SCP2 domain-containing protein | — | — |
| Enterobacter asburiae PDN3 | 0.59 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | 0.35 | EX28DRAFT_4499 | | Uncharacterized protein conserved in bacteria | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.59 | PagCFBP13505_RS16100 | | YggS family pyridoxal phosphate-dependent enzyme | 0.35 | PagCFBP13505_RS15260 | | SCP2 domain-containing protein | — | — |
| Pantoea sp. MT58 | 0.58 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.33 | IAI47_18280 | | SCP2 domain-containing protein | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.58 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.35 | GFF261 | | Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes | low | > 78 |
| Escherichia coli ECRC62 | 0.58 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | 0.34 | BNILDI_05100 | ubiJ | ubiquinone biosynthesis protein UbiJ | — | — |
| Escherichia coli ECRC102 | 0.58 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | 0.33 | NIAGMN_12055 | ubiJ | ubiquinone biosynthesis protein UbiJ | — | — |
| Escherichia fergusonii Becca | 0.58 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | 0.33 | EFB2_04781 | | Ubiquinone biosynthesis accessory factor UbiJ | low | > 86 |
| Escherichia coli ECRC99 | 0.58 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | 0.33 | KEDOAH_13850 | ubiJ | ubiquinone biosynthesis protein UbiJ | — | — |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | 0.33 | HEPCGN_12930 | ubiJ | ubiquinone biosynthesis protein UbiJ | low | > 88 |
| Escherichia coli ECOR27 | 0.58 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | 0.34 | NOLOHH_06430 | ubiJ | ubiquinone biosynthesis protein UbiJ | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.58 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.34 | OHPLBJKB_04217 | | hypothetical protein | low | > 74 |
| Escherichia coli ECRC98 | 0.58 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | 0.33 | JDDGAC_17925 | ubiJ | ubiquinone biosynthesis protein UbiJ | — | — |
| Escherichia coli BL21 | 0.58 | ECD_02781 | | UPF0001 family protein, PLP-binding | 0.34 | ECD_03727 | | aerobic ubiquinone synthesis protein, SCP2 family protein | low | > 61 |
| Escherichia coli ECRC101 | 0.58 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | 0.33 | MCAODC_04805 | ubiJ | ubiquinone biosynthesis protein UbiJ | — | — |
| Escherichia coli BW25113 | 0.58 | b2951 | yggS | predicted enzyme (NCBI) | 0.34 | b3834 | yigP | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.58 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | 0.33 | OKFHMN_14300 | ubiJ | ubiquinone biosynthesis protein UbiJ | — | — |
| Escherichia coli Nissle 1917 | 0.58 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | 0.33 | ECOLIN_RS22120 | | ubiquinone biosynthesis protein UbiJ | low | > 55 |
| Rahnella sp. WP5 | 0.57 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | 0.34 | EX31_RS14620 | | SCP2 domain-containing protein | low | > 89 |
| Shewanella oneidensis MR-1 | 0.56 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | 0.28 | SO4200 | | conserved hypothetical protein (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_1194 | | hypothetical protein (RefSeq) | 0.26 | Shewana3_3726 | | hypothetical protein (RefSeq) | — | — |
| Serratia liquefaciens MT49 | 0.56 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | 0.34 | IAI46_01070 | | SCP2 domain-containing protein | low | > 86 |
| Enterobacter sp. TBS_079 | 0.56 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | 0.35 | MPMX20_04446 | | Ubiquinone biosynthesis accessory factor UbiJ | — | — |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | 0.33 | LU632_RS24000 | | SCP2 domain-containing protein | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.55 | IJEDHG_03450 | | YggS family pyridoxal phosphate enzyme | 0.33 | IJEDHG_08645 | | Ubiquinone biosynthesis accessory factor UbiJ | — | — |
| Shewanella loihica PV-4 | 0.55 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | 0.31 | Shew_3374 | | hypothetical protein (RefSeq) | low | > 60 |
| Klebsiella pneumoniae MKP103 | 0.55 | KDGMDA_04615 | | YggS family pyridoxal phosphate enzyme | 0.35 | KDGMDA_09800 | | Ubiquinone biosynthesis accessory factor UbiJ | — | — |
| Erwinia amylovora T8 | 0.55 | OLJFJH_08530 | | YggS family pyridoxal phosphate enzyme | 0.35 | OLJFJH_06505 | | Ubiquinone biosynthesis accessory factor UbiJ | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.12 | PfGW456L13_300 | | Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.51 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.12 | Pf1N1B4_1563 | | Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes | — | — |
| Pseudomonas simiae WCS417 | 0.50 | PS417_26725 | | hypothetical protein | 0.13 | PS417_01865 | | sterol-binding protein | — | — |
| Pseudomonas segetis P6 | 0.50 | MPMX49_00611 | | Pyridoxal phosphate homeostasis protein | 0.14 | MPMX49_04259 | | Ubiquinone biosynthesis accessory factor UbiJ | — | — |
| Pseudomonas sp. BP01 | 0.50 | JOY50_RS20910 | | YggS family pyridoxal phosphate-dependent enzyme | 0.12 | JOY50_RS09630 | | SCP2 domain-containing protein | low | > 84 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.12 | Pf6N2E2_3780 | | Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes | — | — |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | 0.26 | MIT1002_03630 | | SCP-2 sterol transfer family protein | — | — |
| Pseudomonas sp. RS175 | 0.49 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | 0.12 | PFR28_04988 | | Ubiquinone biosynthesis accessory factor UbiJ | — | — |
| Pseudomonas stutzeri RCH2 | 0.49 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | 0.15 | Psest_3941 | | Uncharacterized protein conserved in bacteria | — | — |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.12 | PFLU_RS01910 | | sterol-binding protein | 0.51 | 66 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.12 | PFLU_RS01910 | | sterol-binding protein | low | > 109 |
| Shewanella amazonensis SB2B | 0.48 | Sama_2477 | | hypothetical protein (RefSeq) | 0.23 | Sama_3203 | | hypothetical protein (RefSeq) | low | > 62 |
| Ralstonia solanacearum GMI1000 | 0.45 | RS_RS13435 | | YggS family pyridoxal phosphate-dependent enzyme | 0.12 | RS_RS02280 | | SCP2 domain-containing protein | — | — |
| Kangiella aquimarina DSM 16071 | 0.44 | B158DRAFT_0196 | | pyridoxal phosphate enzyme, YggS family | 0.20 | B158DRAFT_0743 | | Uncharacterized protein conserved in bacteria | low | > 40 |
| Marinobacter adhaerens HP15 | 0.42 | HP15_288 | | alanine racemase domain protein | 0.12 | HP15_3192 | | protein containing sterol-binding domain | low | > 73 |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | 0.15 | ABIE51_RS00225 | | SCP2 sterol-binding domain-containing protein | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.14 | Xcc-8004.294.1 | | Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes | — | — |
| Castellaniella sp019104865 MT123 | 0.29 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | 0.14 | ABCV34_RS14485 | | SCP2 sterol-binding domain-containing protein | low | > 48 |
| Rhodanobacter denitrificans MT42 | 0.27 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | 0.19 | LRK55_RS10280 | | SCP2 sterol-binding domain-containing protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.27 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | 0.20 | LRK54_RS10640 | | SCP2 sterol-binding domain-containing protein | low | > 59 |
| Rhodanobacter sp000427505 FW510-R12 | 0.27 | LRK53_RS07085 | | YggS family pyridoxal phosphate-dependent enzyme | 0.19 | LRK53_RS03410 | | SCP2 sterol-binding domain-containing protein | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.27 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | 0.17 | ABZR86_RS13450 | | SCP2 sterol-binding domain-containing protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.25 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | 0.20 | OKGIIK_13260 | ubiJ | sterol-binding protein | — | — |
Not shown: 63 genomes with orthologs for CSW01_02455 only; 0 genomes with orthologs for CSW01_00450 only