Conservation of cofitness between CA265_RS10765 and CA265_RS09840 in Pedobacter sp. GW460-11-11-14-LB5

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pedobacter sp. GW460-11-11-14-LB5 1.0 CA265_RS10765 EamA family transporter 1.0 CA265_RS09840 YajQ family cyclic di-GMP-binding protein 0.35 20
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS11675 drug/metabolite exporter YedA 0.33 ABZR86_RS00410 YajQ family cyclic di-GMP-binding protein low > 74
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_06270 hypothetical protein 0.38 AO353_03640 nucleotide-binding protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_15525 hypothetical protein 0.39 AO356_17960 nucleotide-binding protein low > 104
Pseudomonas sp. RS175 0.26 PFR28_03826 putative inner membrane transporter YedA 0.38 PFR28_03425 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_2735 Permease of the drug/metabolite transporter (DMT) superfamily 0.38 Pf1N1B4_650 FIG001943: hypothetical protein YajQ low > 87
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_5045 Permease of the drug/metabolite transporter (DMT) superfamily 0.39 Pf6N2E2_5522 FIG001943: hypothetical protein YajQ low > 103
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_1408 Permease of the drug/metabolite transporter (DMT) superfamily 0.38 PfGW456L13_1840 FIG001943: hypothetical protein YajQ — —
Pseudomonas simiae WCS417 0.25 PS417_24505 membrane protein 0.38 PS417_22510 nucleotide-binding protein — —
Pseudomonas fluorescens SBW25 0.25 PFLU_RS26430 drug/metabolite exporter YedA 0.38 PFLU_RS24150 YajQ family cyclic di-GMP-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS26430 drug/metabolite exporter YedA 0.38 PFLU_RS24150 YajQ family cyclic di-GMP-binding protein low > 109
Pseudomonas putida KT2440 0.24 PP_4767 amino acid exporter for phenylalanine, threonine 0.38 PP_1352 UPF0234 protein PP_1352 low > 96
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_4298 Protein of unknown function DUF6 0.39 Psyr_4087 Protein of unknown function DUF520 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_4298 Protein of unknown function DUF6 0.39 Psyr_4087 Protein of unknown function DUF520 — —
Pseudomonas sp. S08-1 0.23 OH686_04575 hypothetical protein 0.40 OH686_08210 UPF0234 protein Yitk low > 80
Rahnella sp. WP5 0.23 EX31_RS23955 drug/metabolite exporter YedA 0.37 EX31_RS22185 YajQ family cyclic di-GMP-binding protein low > 89
Klebsiella michiganensis M5al 0.21 BWI76_RS18410 drug/metabolite exporter YedA 0.38 BWI76_RS06410 YajQ family cyclic di-GMP-binding protein low > 92
Xanthomonas campestris pv. campestris strain 8004 0.21 Xcc-8004.4970.1 Permease of the drug/metabolite transporter (DMT) superfamily 0.35 Xcc-8004.4605.1 FIG001943: hypothetical protein YajQ low > 74
Lysobacter sp. OAE881 0.21 ABIE51_RS03200 drug/metabolite exporter YedA 0.37 ABIE51_RS18465 YajQ family cyclic di-GMP-binding protein low > 62
Escherichia coli ECRC62 0.20 BNILDI_15030 yedA drug/metabolite exporter YedA 0.37 BNILDI_22755 yajQ nucleotide binding protein YajQ low > 75
Serratia liquefaciens MT49 0.20 IAI46_07395 drug/metabolite exporter YedA 0.37 IAI46_04955 YajQ family cyclic di-GMP-binding protein low > 86
Escherichia coli ECOR38 0.19 HEPCGN_03970 yedA drug/metabolite exporter YedA 0.37 HEPCGN_07020 yajQ nucleotide binding protein YajQ low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.19 GFF3998 Permease of the drug/metabolite transporter (DMT) superfamily 0.39 GFF4337 FIG001943: hypothetical protein YajQ low > 78
Rhodanobacter denitrificans MT42 0.19 LRK55_RS11680 drug/metabolite exporter YedA 0.34 LRK55_RS14390 YajQ family cyclic di-GMP-binding protein low > 63
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_11930 yedA drug/metabolite exporter YedA 0.33 OKGIIK_03500 yajQ YajQ family cyclic di-GMP-binding protein low > 52
Rhodanobacter denitrificans FW104-10B01 0.19 LRK54_RS11955 drug/metabolite exporter YedA 0.33 LRK54_RS14675 YajQ family cyclic di-GMP-binding protein low > 59
Escherichia coli ECRC100 0.18 OKFHMN_25610 yedA drug/metabolite exporter YedA 0.37 OKFHMN_08390 yajQ nucleotide binding protein YajQ — —
Escherichia fergusonii Becca 0.18 EFB2_01988 putative inner membrane transporter YedA 0.37 EFB2_03631 hypothetical protein low > 86
Escherichia coli BW25113 0.18 b1959 yedA predicted inner membrane protein (NCBI) 0.37 b0426 yajQ orf, hypothetical protein (VIMSS) low > 76
Escherichia coli Nissle 1917 0.18 ECOLIN_RS11140 drug/metabolite exporter YedA 0.37 ECOLIN_RS02565 nucleotide binding protein YajQ — —
Escherichia coli ECRC98 0.18 JDDGAC_00195 yedA drug/metabolite exporter YedA 0.37 JDDGAC_12045 yajQ nucleotide binding protein YajQ low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.18 OHPLBJKB_01769 putative inner membrane transporter YedA 0.37 OHPLBJKB_03250 hypothetical protein low > 73
Escherichia coli ECOR27 0.18 NOLOHH_16240 yedA drug/metabolite exporter YedA 0.37 NOLOHH_01340 yajQ nucleotide binding protein YajQ 0.49 55
Escherichia coli ECRC102 0.18 NIAGMN_02445 yedA drug/metabolite exporter YedA 0.37 NIAGMN_06445 yajQ nucleotide binding protein YajQ — —
Escherichia coli ECRC99 0.18 KEDOAH_02485 yedA drug/metabolite exporter YedA 0.37 KEDOAH_19575 yajQ nucleotide binding protein YajQ — —
Escherichia coli ECRC101 0.18 MCAODC_19785 yedA drug/metabolite exporter YedA 0.37 MCAODC_27615 yajQ nucleotide binding protein YajQ low > 87
Enterobacter sp. TBS_079 0.17 MPMX20_02955 putative inner membrane transporter YedA 0.39 MPMX20_01017 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.17 EX28DRAFT_0595 Predicted permease, DMT superfamily 0.37 EX28DRAFT_2545 Uncharacterized protein conserved in bacteria low > 76
Acidovorax sp. GW101-3H11 0.16 Ac3H11_4554 Permease of the drug/metabolite transporter (DMT) superfamily 0.34 Ac3H11_2620 FIG001943: hypothetical protein YajQ — —
Paraburkholderia sabiae LMG 24235 0.16 QEN71_RS05485 EamA family transporter 0.31 QEN71_RS02775 YajQ family cyclic di-GMP-binding protein — —
Burkholderia phytofirmans PsJN 0.16 BPHYT_RS13190 membrane protein 0.32 BPHYT_RS15930 nucleotide-binding protein — —
Paraburkholderia graminis OAS925 0.16 ABIE53_002851 drug/metabolite transporter (DMT)-like permease 0.32 ABIE53_003357 uncharacterized protein YajQ (UPF0234 family) — —
Paraburkholderia bryophila 376MFSha3.1 0.15 H281DRAFT_00402 Permease of the drug/metabolite transporter (DMT) superfamily 0.32 H281DRAFT_04122 hypothetical protein — —
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS31400 GntR family transcriptional regulator 0.37 RR42_RS17155 nucleotide-binding protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.15 GFF134 Permease of the drug/metabolite transporter (DMT) superfamily 0.33 GFF292 FIG001943: hypothetical protein YajQ — —
Ralstonia sp. UNC404CL21Col 0.14 ABZR87_RS20410 EamA family transporter 0.34 ABZR87_RS00820 YajQ family cyclic di-GMP-binding protein low > 80
Ralstonia solanacearum GMI1000 0.14 RS_RS21045 GntR family transcriptional regulator 0.34 RS_RS12780 nucleotide-binding protein low > 80
Ralstonia solanacearum PSI07 0.14 RPSI07_RS03405 GntR family transcriptional regulator 0.35 RPSI07_RS12140 YajQ family cyclic di-GMP-binding protein — —
Ralstonia solanacearum IBSBF1503 0.14 RALBFv3_RS19785 GntR family transcriptional regulator 0.35 RALBFv3_RS05160 YajQ family cyclic di-GMP-binding protein low > 76
Ralstonia solanacearum UW163 0.14 UW163_RS19390 GntR family transcriptional regulator 0.35 UW163_RS08465 YajQ family cyclic di-GMP-binding protein — —
Variovorax sp. SCN45 0.13 GFF940 Permease of the drug/metabolite transporter (DMT) superfamily 0.32 GFF3099 UPF0234 protein Yitk — —
Variovorax sp. OAS795 0.13 ABID97_RS13970 drug/metabolite exporter YedA 0.32 ABID97_RS21685 YajQ family cyclic di-GMP-binding protein — —
Dickeya dianthicola 67-19 0.12 HGI48_RS08790 EamA family transporter 0.38 HGI48_RS05620 YajQ family cyclic di-GMP-binding protein — —
Dickeya dadantii 3937 0.12 DDA3937_RS08650 EamA family transporter 0.38 DDA3937_RS05560 YajQ family cyclic di-GMP-binding protein low > 74
Dickeya dianthicola ME23 0.12 DZA65_RS09080 EamA family transporter 0.38 DZA65_RS05945 YajQ family cyclic di-GMP-binding protein low > 75
Kangiella aquimarina DSM 16071 0.12 B158DRAFT_1202 EamA-like transporter family. 0.36 B158DRAFT_0029 Uncharacterized protein conserved in bacteria low > 40
Magnetospirillum magneticum AMB-1 0.12 AMB_RS22180 EamA/RhaT family transporter 0.44 AMB_RS18375 nucleotide-binding protein low > 64
Alteromonas macleodii MIT1002 0.10 MIT1002_04053 putative DMT superfamily transporter inner membrane protein 0.37 MIT1002_04129 putative nucleotide-binding protein low > 70
Erwinia tracheiphila SCR3 0.10 LU632_RS09305 EamA family transporter 0.36 LU632_RS18450 YajQ family cyclic di-GMP-binding protein low > 74
Acinetobacter radioresistens SK82 0.09 MPMX26_00851 putative amino-acid metabolite efflux pump 0.38 MPMX26_02644 hypothetical protein — —
Azospirillum sp. SherDot2 0.09 MPMX19_03412 putative cystine transporter YijE 0.37 MPMX19_04413 hypothetical protein low > 112
Pectobacterium carotovorum WPP14 0.09 HER17_RS13320 DMT family transporter 0.38 HER17_RS15905 YajQ family cyclic di-GMP-binding protein low > 75

Not shown: 10 genomes with orthologs for CA265_RS10765 only; 19 genomes with orthologs for CA265_RS09840 only