Conservation of cofitness between BPHYT_RS04005 and BPHYT_RS12475 in Burkholderia phytofirmans PsJN

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS04005 GDP-L-fucose synthase 1.0 BPHYT_RS12475 DNA mismatch repair protein MutS 0.35 13
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_04777 GDP-L-fucose synthase 0.93 H281DRAFT_00537 DNA mismatch repair protein MutS low > 103
Paraburkholderia graminis OAS925 0.90 ABIE53_000941 GDP-L-fucose synthase 0.91 ABIE53_002719 DNA mismatch repair protein MutS low > 113
Paraburkholderia sabiae LMG 24235 0.82 QEN71_RS26355 GDP-L-fucose synthase 0.86 QEN71_RS06085 DNA mismatch repair protein MutS low > 153
Cupriavidus basilensis FW507-4G11 0.70 RR42_RS34460 GDP-L-fucose synthase 0.64 RR42_RS06285 DNA mismatch repair protein MutS low > 128
Pontibacter actiniarum KMM 6156, DSM 19842 0.61 CA264_05195 GDP-fucose synthetase 0.33 CA264_18545 DNA mismatch repair protein MutS low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.58 DVU0090 wcaG GDP-fucose synthetase (TIGR) 0.31 DVU1649 mutS DNA mismatch repair protein MutS (TIGR) — —
Pedobacter sp. GW460-11-11-14-LB5 0.58 CA265_RS19675 GDP-fucose synthetase 0.32 CA265_RS08220 DNA mismatch repair protein MutS low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.58 ABZR88_RS17480 GDP-L-fucose synthase 0.32 ABZR88_RS10580 DNA mismatch repair protein MutS — —
Enterobacter sp. TBS_079 0.58 MPMX20_03034 GDP-L-fucose synthase 0.47 MPMX20_03619 DNA mismatch repair protein MutS low > 85
Dechlorosoma suillum PS 0.58 Dsui_0086 nucleoside-diphosphate-sugar epimerase 0.58 Dsui_2244 DNA mismatch repair protein MutS low > 51
Enterobacter asburiae PDN3 0.57 EX28DRAFT_0503 Nucleoside-diphosphate-sugar epimerases 0.47 EX28DRAFT_2829 DNA mismatch repair protein MutS low > 76
Escherichia fergusonii Becca 0.57 EFB2_01802 GDP-L-fucose synthase 0.47 EFB2_01179 DNA mismatch repair protein MutS low > 86
Escherichia coli ECOR38 0.57 HEPCGN_03050 fcl GDP-L-fucose synthase 0.47 HEPCGN_19705 mutS DNA mismatch repair protein MutS low > 87
Escherichia coli Nissle 1917 0.57 ECOLIN_RS12090 GDP-L-fucose synthase 0.47 ECOLIN_RS15275 DNA mismatch repair protein MutS — —
Escherichia coli ECRC62 0.57 BNILDI_14590 fcl GDP-L-fucose synthase 0.47 BNILDI_10920 mutS DNA mismatch repair protein MutS low > 75
Escherichia coli BL21 0.57 ECD_01958 bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase 0.47 ECD_02583 methyl-directed mismatch repair protein low > 61
Escherichia coli BW25113 0.57 b2052 fcl bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) 0.47 b2733 mutS DNA mismatch repair protein (NCBI) low > 76
Escherichia coli ECRC99 0.57 KEDOAH_03800 fcl GDP-L-fucose synthase 0.47 KEDOAH_07610 mutS DNA mismatch repair protein MutS — —
Pseudomonas stutzeri RCH2 0.57 Psest_1819 Nucleoside-diphosphate-sugar epimerases 0.47 Psest_2875 DNA mismatch repair protein MutS low > 67
Escherichia coli ECOR27 0.57 NOLOHH_15680 fcl GDP-L-fucose synthase 0.47 NOLOHH_12370 mutS DNA mismatch repair protein MutS low > 75
Escherichia coli ECRC102 0.57 NIAGMN_22295 fcl GDP-L-fucose synthase 0.47 NIAGMN_18295 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC100 0.57 OKFHMN_24350 fcl GDP-L-fucose synthase 0.47 OKFHMN_20525 mutS DNA mismatch repair protein MutS low > 80
Escherichia coli ECRC98 0.57 JDDGAC_28460 fcl GDP-L-fucose synthase 0.47 JDDGAC_24190 mutS DNA mismatch repair protein MutS low > 86
Escherichia coli ECRC101 0.57 MCAODC_20590 fcl GDP-L-fucose synthase 0.47 MCAODC_11050 mutS DNA mismatch repair protein MutS low > 87
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_2695 NAD-dependent epimerase/dehydratase (RefSeq) 0.32 DvMF_0355 DNA mismatch repair protein MutS (RefSeq) low > 51
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF3876 GDP-L-fucose synthetase (EC 1.1.1.271) 0.48 GFF4773 DNA mismatch repair protein MutS low > 78
Rhodanobacter denitrificans MT42 0.57 LRK55_RS03655 GDP-L-fucose synthase 0.47 LRK55_RS14650 DNA mismatch repair protein MutS low > 63
Azospirillum brasilense Sp245 0.56 AZOBR_RS03370 GDP-L-fucose synthase 0.30 AZOBR_RS02125 DNA mismatch repair protein MutS low > 97
Castellaniella sp019104865 MT123 0.56 ABCV34_RS12930 GDP-L-fucose synthase 0.49 ABCV34_RS00270 DNA mismatch repair protein MutS — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF1841 GDP-L-fucose synthetase (EC 1.1.1.271) 0.49 GFF3599 DNA mismatch repair protein MutS low > 90
Dinoroseobacter shibae DFL-12 0.55 Dshi_4142 NAD-dependent epimerase/dehydratase (RefSeq) 0.32 Dshi_3466 DNA mismatch repair protein MutS (RefSeq) low > 64
Parabacteroides merdae CL09T00C40 0.55 HMPREF1078_RS03850 GDP-L-fucose synthase 0.32 HMPREF1078_RS06455 DNA mismatch repair protein MutS low > 61
Pseudomonas fluorescens SBW25-INTG 0.54 PFLU_RS17885 GDP-L-fucose synthase 0.47 PFLU_RS05765 DNA mismatch repair protein MutS low > 109
Pseudomonas fluorescens SBW25 0.54 PFLU_RS17885 GDP-L-fucose synthase 0.47 PFLU_RS05765 DNA mismatch repair protein MutS low > 109
Caulobacter crescentus NA1000 Δfur 0.54 CCNA_00471 GDP-L-fucose synthase 0.26 CCNA_00012 DNA mismatch repair protein MutS low > 67
Caulobacter crescentus NA1000 0.54 CCNA_00471 GDP-L-fucose synthase 0.26 CCNA_00012 DNA mismatch repair protein MutS low > 66
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_1700 wcaG GDP-fucose synthetase NAD dependent epimerase/dehydratase 0.29 Synpcc7942_2247 mutS DNA mismatch repair protein — —
Pectobacterium carotovorum WPP14 0.54 HER17_RS14535 GDP-L-fucose synthase 0.48 HER17_RS16220 DNA mismatch repair protein MutS low > 75
Azospirillum sp. SherDot2 0.54 MPMX19_06634 GDP-L-fucose synthase 0.31 MPMX19_00908 DNA mismatch repair protein MutS low > 112
Rhodospirillum rubrum S1H 0.53 Rru_A0254 NAD-dependent epimerase/dehydratase (NCBI) 0.31 Rru_A3541 MutS 1 protein (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.52 PGA1_65p00300 GDP-L-fucose synthetase Fcl 0.31 PGA1_c35000 DNA mismatch repair protein MutS — —
Variovorax sp. OAS795 0.52 ABID97_RS19130 GDP-L-fucose synthase 0.47 ABID97_RS20815 DNA mismatch repair protein MutS low > 91
Magnetospirillum magneticum AMB-1 0.51 AMB_RS00820 GDP-L-fucose synthase 0.32 AMB_RS01455 DNA mismatch repair protein MutS low > 64
Bacteroides thetaiotaomicron VPI-5482 0.50 BT1225 GDP-fucose synthetase (NCBI ptt file) 0.32 BT3121 DNA mismatch repair protein mutS (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.50 BACOVA_00512 NAD dependent epimerase/dehydratase family protein 0.32 BACOVA_02824 DNA mismatch repair protein MutS — —
Agrobacterium fabrum C58 0.50 Atu4790 GDP-fucose synthetase 0.31 Atu0345 DNA mismatch repair protein, MutS family low > 89
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS12535 GDP-L-fucose synthase 0.32 HMPREF1181_RS01980 DNA mismatch repair protein MutS low > 56
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS06610 GDP-L-fucose synthase 0.33 HMPREF1058_RS11435 DNA mismatch repair protein MutS low > 67
Phocaeicola dorei CL03T12C01 0.49 ABI39_RS20405 GDP-L-fucose synthase 0.33 ABI39_RS05500 DNA mismatch repair protein MutS low > 72
Variovorax sp. SCN45 0.49 GFF60 GDP-L-fucose synthetase (EC 1.1.1.271) 0.47 GFF6634 DNA mismatch repair protein MutS low > 127
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS22065 EpiA 0.60 HSERO_RS16360 DNA mismatch repair protein MutS 0.36 72
Echinicola vietnamensis KMM 6221, DSM 17526 0.35 Echvi_4397 Nucleoside-diphosphate-sugar epimerases 0.32 Echvi_0960 DNA mismatch repair protein MutS low > 79
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS13020 NAD-dependent epimerase/dehydratase family protein 0.28 A4249_RS12110 DNA mismatch repair protein MutS low > 48
Dickeya dianthicola 67-19 0.23 HGI48_RS18610 GDP-L-fucose synthase 0.47 HGI48_RS05230 DNA mismatch repair protein MutS low > 71
Dickeya dianthicola ME23 0.23 DZA65_RS19745 GDP-L-fucose synthase 0.47 DZA65_RS05570 DNA mismatch repair protein MutS low > 75
Dickeya dadantii 3937 0.23 DDA3937_RS18680 GDP-L-fucose synthase 0.48 DDA3937_RS05230 DNA mismatch repair protein MutS low > 74
Rhizobium sp. OAE497 0.14 ABIE40_RS02610 NAD-dependent epimerase/dehydratase family protein 0.31 ABIE40_RS01775 DNA mismatch repair protein MutS low > 107

Not shown: 1 genomes with orthologs for BPHYT_RS04005 only; 42 genomes with orthologs for BPHYT_RS12475 only