Conservation of cofitness between BPHYT_RS16975 and BPHYT_RS03535 in Burkholderia phytofirmans PsJN

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16975 shikimate 5-dehydrogenase 1.0 BPHYT_RS03535 phospho-2-dehydro-3-deoxyheptonate aldolase 0.75 5
Paraburkholderia graminis OAS925 0.93 ABIE53_003560 shikimate dehydrogenase 0.98 ABIE53_000850 3-deoxy-7-phosphoheptulonate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.90 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.98 H281DRAFT_04687 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase — —
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS27130 shikimate dehydrogenase 0.96 QEN71_RS26560 3-deoxy-7-phosphoheptulonate synthase AroG 0.82 7
Ralstonia solanacearum PSI07 0.55 RPSI07_RS11300 shikimate dehydrogenase 0.85 RPSI07_RS11845 3-deoxy-7-phosphoheptulonate synthase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05945 shikimate dehydrogenase 0.84 RALBFv3_RS05460 3-deoxy-7-phosphoheptulonate synthase low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS07680 shikimate dehydrogenase 0.84 UW163_RS08165 3-deoxy-7-phosphoheptulonate synthase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS13890 shikimate dehydrogenase 0.85 RS_RS13320 3-deoxy-7-phosphoheptulonate synthase 0.45 48
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01605 shikimate dehydrogenase 0.86 ABZR87_RS01110 3-deoxy-7-phosphoheptulonate synthase AroG 0.70 1
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS01990 shikimate 5-dehydrogenase 0.83 HSERO_RS07160 phospho-2-dehydro-3-deoxyheptonate aldolase 0.77 9
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS17645 shikimate dehydrogenase 0.85 RR42_RS05860 phospho-2-dehydro-3-deoxyheptonate aldolase 0.85 9
Pseudomonas sp. S08-1 0.47 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.47 OH686_01760 3-deoxy-7-phosphoheptulonate synthase low > 80
Shewanella sp. ANA-3 0.47 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.65 Shewana3_3528 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_00280 shikimate dehydrogenase 0.64 CSW01_19270 3-deoxy-7-phosphoheptulonate synthase low > 62
Castellaniella sp019104865 MT123 0.44 ABCV34_RS11630 shikimate dehydrogenase 0.71 ABCV34_RS06825 3-deoxy-7-phosphoheptulonate synthase AroG — —
Pseudomonas stutzeri RCH2 0.44 Psest_0029 shikimate 5-dehydrogenase 0.47 Psest_2331 phospho-2-dehydro-3-deoxyheptonate aldolase — —
Shewanella oneidensis MR-1 0.44 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.64 SO0756 aroG phospho-2-dehydro-3-deoxyheptonate aldolase, phe-sensitive (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.41 Sama_0052 shikimate dehydrogenase (RefSeq) 0.60 Sama_0657 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) low > 62
Pantoea sp. MT58 0.40 IAI47_02315 shikimate dehydrogenase 0.65 IAI47_13605 3-deoxy-7-phosphoheptulonate synthase AroG — —
Shewanella loihica PV-4 0.40 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.65 Shew_0851 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.66 OHPLBJKB_02959 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive low > 73
Escherichia coli BL21 0.39 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.66 ECD_00707 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible low > 61
Escherichia coli BW25113 0.39 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.66 b0754 aroG 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) low > 76
Escherichia coli ECOR27 0.39 NOLOHH_09355 aroE shikimate dehydrogenase 0.66 NOLOHH_23170 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 75
Escherichia coli ECRC62 0.39 BNILDI_02165 aroE shikimate dehydrogenase 0.66 BNILDI_21165 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 75
Escherichia coli ECOR38 0.39 HEPCGN_16385 aroE shikimate dehydrogenase 0.66 HEPCGN_01535 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 87
Escherichia coli ECRC101 0.38 MCAODC_08085 aroE shikimate dehydrogenase 0.66 MCAODC_25960 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 87
Escherichia coli ECRC98 0.38 JDDGAC_21185 aroE shikimate dehydrogenase 0.66 JDDGAC_10395 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 86
Escherichia coli ECRC102 0.38 NIAGMN_15325 aroE shikimate dehydrogenase 0.66 NIAGMN_04790 aroG 3-deoxy-7-phosphoheptulonate synthase AroG — —
Escherichia coli ECRC99 0.38 KEDOAH_10585 aroE shikimate dehydrogenase 0.66 KEDOAH_21225 aroG 3-deoxy-7-phosphoheptulonate synthase AroG — —
Escherichia coli ECRC100 0.38 OKFHMN_17565 aroE shikimate dehydrogenase 0.66 OKFHMN_06740 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 80
Acidovorax sp. GW101-3H11 0.38 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.63 Ac3H11_4034 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) 0.95 9
Escherichia coli Nissle 1917 0.38 ECOLIN_RS18840 shikimate dehydrogenase 0.66 ECOLIN_RS04015 3-deoxy-7-phosphoheptulonate synthase AroG — —
Escherichia fergusonii Becca 0.38 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.66 EFB2_03352 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive low > 86
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0046 shikimate dehydrogenase 0.65 EX28DRAFT_2241 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) low > 76
Serratia liquefaciens MT49 0.37 IAI46_23240 shikimate dehydrogenase 0.67 IAI46_06405 3-deoxy-7-phosphoheptulonate synthase AroG low > 86
Erwinia tracheiphila SCR3 0.37 LU632_RS22445 aroE shikimate dehydrogenase 0.64 LU632_RS15925 aroG 3-deoxy-7-phosphoheptulonate synthase AroG low > 74
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.65 BWI76_RS08600 3-deoxy-7-phosphoheptulonate synthase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.66 GFF8 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) — —
Enterobacter sp. TBS_079 0.36 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.65 MPMX20_01381 Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive low > 85
Variovorax sp. SCN45 0.35 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.64 GFF4447 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) 0.71 40
Acinetobacter radioresistens SK82 0.35 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.49 MPMX26_01673 Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive low > 36
Dickeya dadantii 3937 0.35 DDA3937_RS19100 shikimate dehydrogenase 0.66 DDA3937_RS06560 3-deoxy-7-phosphoheptulonate synthase AroG — —
Dickeya dianthicola ME23 0.35 DZA65_RS20315 shikimate dehydrogenase 0.67 DZA65_RS06960 3-deoxy-7-phosphoheptulonate synthase AroG — —
Dickeya dianthicola 67-19 0.35 HGI48_RS19190 shikimate dehydrogenase 0.66 HGI48_RS06605 3-deoxy-7-phosphoheptulonate synthase AroG — —
Variovorax sp. OAS795 0.34 ABID97_RS06300 shikimate dehydrogenase 0.64 ABID97_RS06345 3-deoxy-7-phosphoheptulonate synthase — —
Pectobacterium carotovorum WPP14 0.33 HER17_RS02250 shikimate dehydrogenase 0.67 HER17_RS14805 3-deoxy-7-phosphoheptulonate synthase AroG low > 75
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.66 Xcc-8004.704.1 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) low > 74
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0259 shikimate 5-dehydrogenase 0.47 B158DRAFT_1384 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) low > 40
Rhodopseudomonas palustris CGA009 0.21 TX73_022410 shikimate dehydrogenase 0.63 TX73_000140 3-deoxy-7-phosphoheptulonate synthase — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.50 Synpcc7942_2501 aroF phospho-2-dehydro-3-heoxyheptonate aldolase — —
Caulobacter crescentus NA1000 Δfur 0.17 CCNA_00003 shikimate 5-dehydrogenase 0.65 CCNA_01463 3-deoxy-7-phosphoheptulonate synthase low > 67
Caulobacter crescentus NA1000 0.17 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.65 CCNA_01463 3-deoxy-7-phosphoheptulonate synthase low > 66

Not shown: 38 genomes with orthologs for BPHYT_RS16975 only; 8 genomes with orthologs for BPHYT_RS03535 only