Conservation of cofitness between BPHYT_RS09440 and BPHYT_RS03405 in Burkholderia phytofirmans PsJN

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS09440 glycerate kinase 1.0 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.26 20
Paraburkholderia graminis OAS925 0.86 ABIE53_002112 glycerate kinase 0.89 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.85 H281DRAFT_00894 glycerate kinase 0.91 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 103
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS21995 glycerate kinase 0.86 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 153
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS10055 glycerate kinase 0.65 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase low > 78
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS23230 glycerate kinase 0.68 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase low > 128
Pseudomonas fluorescens SBW25 0.37 PFLU_RS14645 glycerate kinase 0.48 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS14645 glycerate kinase 0.48 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 109
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_26900 glycerate kinase 0.51 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 101
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_4998 Glycerate kinase (EC 2.7.1.31) 0.51 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) — —
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_2941 Glycerate kinase (EC 2.7.1.31) 0.51 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_22870 glycerate kinase 0.48 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 104
Pseudomonas simiae WCS417 0.35 PS417_13970 glycerate kinase 0.49 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 0.16 79
Pseudomonas sp. S08-1 0.35 OH686_04780 Glycerate kinase 0.52 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 80
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_3115 Glycerate kinase 0.50 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_3115 Glycerate kinase 0.50 Psyr_1227 Queuosine biosynthesis protein low > 86
Pseudomonas sp. RS175 0.35 PFR28_02469 Glycerate 2-kinase 0.49 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 88
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_460 Glycerate kinase (EC 2.7.1.31) 0.48 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 103
Pseudomonas putida KT2440 0.34 PP_3178 glycerate kinase 0.51 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 96
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5387.1 Glycerate kinase (EC 2.7.1.31) 0.53 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 74
Serratia liquefaciens MT49 0.29 IAI46_05265 glycerate kinase 0.50 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Shewanella loihica PV-4 0.29 Shew_2534 glycerate kinase (RefSeq) 0.57 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4430 Glycerate kinase (EC 2.7.1.31) 0.50 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) low > 78
Pectobacterium carotovorum WPP14 0.28 HER17_RS04100 glycerate kinase 0.50 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Shewanella sp. ANA-3 0.28 Shewana3_2685 glycerate kinase (RefSeq) 0.55 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 73
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS12910 glycerate kinase 0.30 HMPREF1058_RS02515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 67
Acinetobacter radioresistens SK82 0.28 MPMX26_00368 Glycerate 2-kinase 0.48 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Klebsiella michiganensis M5al 0.28 BWI76_RS22820 glycerate kinase 0.51 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 92
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_18660 glycerate kinase 0.54 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 62
Escherichia coli ECOR38 0.28 HEPCGN_06530 glxK glycerate 3-kinase 0.51 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 87
Escherichia coli ECRC62 0.27 BNILDI_22305 glxK glycerate 3-kinase 0.50 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Enterobacter sp. TBS_079 0.27 MPMX20_03656 Glycerate 2-kinase 0.51 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 85
Escherichia coli ECRC100 0.27 OKFHMN_07885 glxK glycerate 3-kinase 0.50 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 80
Escherichia coli ECRC98 0.27 JDDGAC_11535 glxK glycerate 3-kinase 0.50 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 86
Escherichia coli ECRC99 0.27 KEDOAH_20080 glxK glycerate 3-kinase 0.50 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC102 0.27 NIAGMN_05940 glxK glycerate 3-kinase 0.50 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECRC101 0.27 MCAODC_27105 glxK glycerate 3-kinase 0.50 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 87
Shewanella oneidensis MR-1 0.27 SO1770 glycerate kinase, putative (NCBI ptt file) 0.56 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) low > 76
Escherichia coli Nissle 1917 0.27 ECOLIN_RS02985 glycerate 3-kinase 0.50 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Escherichia coli ECOR27 0.27 NOLOHH_00875 glxK glycerate 3-kinase 0.50 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Escherichia coli BL21 0.27 ECD_00464 glycerate kinase II 0.50 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 61
Rahnella sp. WP5 0.27 EX31_RS07975 glycerate kinase 0.49 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_03167 Glycerate 3-kinase 0.50 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 73
Enterobacter asburiae PDN3 0.27 EX28DRAFT_2867 glycerate kinase 0.51 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 76
Escherichia coli BW25113 0.26 b0514 glxK glycerate kinase II (NCBI) 0.50 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) low > 76
Dickeya dianthicola ME23 0.26 DZA65_RS18160 glycerate kinase 0.51 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 75
Dickeya dianthicola 67-19 0.26 HGI48_RS17085 glycerate kinase 0.51 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Erwinia tracheiphila SCR3 0.26 LU632_RS06335 glycerate kinase 0.48 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA low > 74
Escherichia fergusonii Becca 0.26 EFB2_03548 Glycerate 3-kinase 0.50 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase low > 86
Dickeya dadantii 3937 0.26 DDA3937_RS17030 glycerate kinase 0.51 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Shewanella amazonensis SB2B 0.26 Sama_3228 glycerate kinase (RefSeq) 0.56 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) low > 62
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS16785 glycerate kinase 0.28 HMPREF1181_RS01705 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS08645 glycerate kinase 0.29 HMPREF1078_RS17105 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.24 ABZR88_RS00815 glycerate kinase 0.34 ABZR88_RS03940 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA — —
Bacteroides thetaiotaomicron VPI-5482 0.24 BT1437 conserved hypothetical protein (NCBI ptt file) 0.28 BT3214 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.23 BACOVA_02041 glycerate kinase 0.29 BACOVA_02915 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.18 Echvi_4031 glycerate kinase 0.33 Echvi_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase — —

Not shown: 2 genomes with orthologs for BPHYT_RS09440 only; 43 genomes with orthologs for BPHYT_RS03405 only