| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu3296 | | two component response regulator for C4-dicarboxylate transport | 1.0 | Atu4017 | | MFS permease | 0.32 | 10 |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS02725 | | sigma-54 dependent transcriptional regulator | 0.41 | ABCV34_RS09940 | | MFS transporter | low | > 48 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.51 | A4249_RS04415 | | sigma-54 dependent transcriptional regulator | 0.63 | A4249_RS02835 | | MFS transporter | low | > 48 |
| Herbaspirillum seropedicae SmR1 | 0.51 | HSERO_RS16810 | | Fis family transcriptional regulator | 0.46 | HSERO_RS16820 | | 2-oxoglutarate:H+ symporter (from data) | 0.56 | 1 |
| Pseudomonas segetis P6 | 0.50 | MPMX49_00215 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.22 | MPMX49_00464 | | Proline/betaine transporter | low | > 75 |
| Pseudomonas fluorescens FW300-N2E3 | 0.50 | AO353_03805 | | C4-dicarboxylate ABC transporter | 0.62 | AO353_03810 | | Alpha-ketoglutarate permease, MFS superfamily (from data) | 0.62 | 1 |
| Ralstonia sp. UNC404CL21Col | 0.49 | ABZR87_RS16305 | | sigma-54 dependent transcriptional regulator | 0.59 | ABZR87_RS16295 | | MFS transporter | low | > 80 |
| Pseudomonas lactucae CFBP13502 | 0.49 | GEMAOFIL_04682 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.62 | GEMAOFIL_04683 | | Alpha-ketoglutarate permease | low | > 96 |
| Pseudomonas aeruginosa MRSN321 | 0.49 | DY961_RS25855 | | sigma-54 dependent transcriptional regulator | 0.63 | DY961_RS25955 | | MFS transporter | 0.82 | 2 |
| Pseudomonas aeruginosa PUPa3 | 0.49 | DQ20_RS58285 | | sigma-54 dependent transcriptional regulator | 0.63 | DQ20_RS58380 | | MFS transporter | 0.73 | 1 |
| Pseudomonas aeruginosa PA14 | 0.49 | IKLFDK_25855 | | DNA-binding response regulator | 0.63 | IKLFDK_25760 | | alpha-ketoglutarate permease | 0.52 | 1 |
| Pseudomonas fluorescens FW300-N1B4 | 0.49 | Pf1N1B4_685 | | Nitrogen regulation protein NR(I) | 0.61 | Pf1N1B4_686 | | Dicarboxylate MFS transporter | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.49 | PfGW456L13_1806 | | Nitrogen regulation protein NR(I) | 0.60 | PfGW456L13_1805 | | Dicarboxylate MFS transporter | 0.91 | 1 |
| Pseudomonas sp. DMC3 | 0.49 | GFF5041 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.60 | GFF5042 | | Alpha-ketoglutarate permease | low | > 89 |
| Pseudomonas simiae WCS417 | 0.48 | PS417_22645 | | C4-dicarboxylate ABC transporter | 0.62 | PS417_22650 | | MFS transporter | 0.38 | 1 |
| Pseudomonas orientalis W4I3 | 0.48 | QF045_RS24815 | | sigma-54 dependent transcriptional regulator | 0.61 | QF045_RS24820 | | MFS transporter | low | > 93 |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS23460 | | sigma-54 dependent transcriptional regulator | 0.48 | ECOLIN_RS14640 | | alpha-ketoglutarate permease | low | > 55 |
| Escherichia fergusonii Becca | 0.48 | EFB2_04538 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.48 | EFB2_01309 | | Alpha-ketoglutarate permease | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_17800 | | C4-dicarboxylate ABC transporter | 0.61 | AO356_17790 | | alpha-ketoglutarate permease (MHS family) (from data) | 0.89 | 1 |
| Pseudomonas fluorescens SBW25 | 0.48 | PFLU_RS24280 | | sigma-54-dependent Fis family transcriptional regulator | 0.62 | PFLU_RS24285 | | MFS transporter | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.48 | PFLU_RS24280 | | sigma-54-dependent Fis family transcriptional regulator | 0.62 | PFLU_RS24285 | | MFS transporter | 0.68 | 1 |
| Cupriavidus basilensis FW507-4G11 | 0.48 | RR42_RS01705 | | Fis family transcriptional regulator | 0.47 | RR42_RS21430 | | alpha-ketoglutarate permease | low | > 128 |
| Pseudomonas sp. RS175 | 0.48 | PFR28_03462 | | C4-dicarboxylate transport transcriptional regulatory protein DctD | 0.61 | PFR28_03468 | | Alpha-ketoglutarate permease | 0.96 | 1 |
| Ralstonia solanacearum GMI1000 | 0.48 | RS_RS01635 | | sigma-54-dependent Fis family transcriptional regulator | 0.57 | RS_RS17230 | | MFS transporter | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_5487 | | Nitrogen regulation protein NR(I) | 0.61 | Pf6N2E2_5486 | | Alpha-ketoglutarate permease (from data) | 0.77 | 1 |
| Ralstonia solanacearum IBSBF1503 | 0.47 | RALBFv3_RS10795 | | sigma-54-dependent Fis family transcriptional regulator | 0.58 | RALBFv3_RS23235 | | MFS transporter | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS22520 | | sigma-54-dependent Fis family transcriptional regulator | 0.58 | RPSI07_RS00035 | | MFS transporter | low | > 81 |
| Ralstonia solanacearum UW163 | 0.47 | UW163_RS02785 | | sigma-54-dependent Fis family transcriptional regulator | 0.58 | UW163_RS16485 | | MFS transporter | — | — |
| Pseudomonas sp. SVBP6 | 0.47 | COO64_RS16760 | | sigma-54 dependent transcriptional regulator | 0.62 | COO64_RS26190 | | MFS transporter | low | > 93 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.47 | H281DRAFT_02037 | | two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family | 0.46 | H281DRAFT_05236 | | MFS transporter, MHS family, alpha-ketoglutarate permease | low | > 103 |
| Pseudomonas putida KT2440 | 0.47 | PP_1066 | | C4-dicarboxylate transport transcriptional regulatory protein | 0.61 | PP_1400 | | Alpha-ketoglutarate permease | low | > 96 |
| Pseudomonas sp. BP01 | 0.47 | JOY50_RS14825 | | sigma-54 dependent transcriptional regulator | 0.61 | JOY50_RS14525 | | MFS transporter | low | > 84 |
| Paraburkholderia graminis OAS925 | 0.47 | ABIE53_000648 | | two-component system C4-dicarboxylate transport response regulator DctD | 0.49 | ABIE53_002314 | | MHS family alpha-ketoglutarate permease-like MFS transporter | low | > 113 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_3995 | | Helix-turn-helix, Fis-type | 0.62 | Psyr_3999 | | General substrate transporter:Major facilitator superfamily | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_3995 | | Helix-turn-helix, Fis-type | 0.62 | Psyr_3999 | | General substrate transporter:Major facilitator superfamily | 0.48 | 2 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS02520 | | Fis family transcriptional regulator | 0.46 | BPHYT_RS11175 | | alpha-ketoglutarate transporter | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS01375 | | sigma-54 dependent transcriptional regulator | 0.48 | QEN71_RS07390 | | MFS family transporter | 0.52 | 20 |
| Sphingomonas koreensis DSMZ 15582 | 0.46 | Ga0059261_0619 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.70 | Ga0059261_3091 | | Sugar (and other) transporter | low | > 68 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS26605 | | sigma-54 dependent transcriptional regulator | 0.48 | ABID97_RS08005 | | MFS family transporter | low | > 91 |
| Variovorax sp. SCN45 | 0.42 | GFF1691 | | Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake | 0.49 | GFF5985 | | dicarboxylic acid transporter PcaT | low | > 127 |
| Sphingobium sp. HT1-2 | 0.38 | GFF159 | | hypothetical protein | 0.71 | GFF5307 | | FIG00883918: hypothetical protein | low | > 95 |
| Klebsiella michiganensis M5al | 0.35 | BWI76_RS21250 | | two-component system response regulator GlrR | 0.46 | BWI76_RS21415 | | MFS transporter | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.34 | KDGMDA_28370 | | two-component system response regulator QseF/GlrR | 0.46 | KDGMDA_28540 | | alpha-ketoglutarate transporter | low | > 95 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.34 | GFF2455 | | Putative sensory histidine kinase YfhA | 0.50 | GFF2093 | | Alpha-ketoglutarate permease | low | > 78 |
| Erwinia amylovora T8 | 0.34 | OLJFJH_10330 | | two-component system response regulator QseF/GlrR | 0.48 | OLJFJH_09770 | | alpha-ketoglutarate transporter | low | > 58 |
| Rahnella sp. WP5 | 0.34 | EX31_RS20615 | | two-component system response regulator GlrR | 0.47 | EX31_RS13690 | | MFS transporter | low | > 89 |
| Serratia liquefaciens MT49 | 0.34 | IAI46_19460 | | two-component system response regulator GlrR | 0.48 | IAI46_20040 | | MFS transporter | low | > 87 |
| Pectobacterium carotovorum WPP14 | 0.34 | HER17_RS05925 | | two-component system response regulator GlrR | 0.49 | HER17_RS04420 | | MFS transporter | low | > 75 |
| Dickeya dianthicola ME23 | 0.34 | DZA65_RS16815 | | two-component system response regulator GlrR | 0.47 | DZA65_RS17945 | | MFS transporter | low | > 75 |
| Dickeya dadantii 3937 | 0.34 | DDA3937_RS15640 | | two-component system response regulator GlrR | 0.47 | DDA3937_RS16800 | | MFS transporter | low | > 74 |
| Escherichia coli ECOR27 | 0.33 | NOLOHH_13170 | qseF | two-component system response regulator QseF/GlrR | 0.47 | NOLOHH_12970 | kgtP | alpha-ketoglutarate permease | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.33 | PagCFBP13505_RS14835 | | two-component system response regulator GlrR | 0.50 | PagCFBP13505_RS14455 | | MFS transporter | low | > 74 |
| Escherichia coli ECRC62 | 0.33 | BNILDI_11970 | qseF | two-component system response regulator QseF/GlrR | 0.47 | BNILDI_11775 | kgtP | alpha-ketoglutarate permease | low | > 75 |
| Dickeya dianthicola 67-19 | 0.33 | HGI48_RS15735 | | two-component system response regulator GlrR | 0.47 | HGI48_RS16870 | | MFS transporter | low | > 71 |
| Enterobacter sp. TBS_079 | 0.33 | MPMX20_03423 | | Transcriptional regulatory protein QseF | 0.49 | MPMX20_03456 | | Alpha-ketoglutarate permease | low | > 85 |
| Pantoea sp. MT58 | 0.33 | IAI47_04945 | | two-component system response regulator GlrR | 0.49 | IAI47_04465 | | MFS transporter | low | > 76 |
| Escherichia coli ECRC100 | 0.33 | OKFHMN_21495 | qseF | two-component system response regulator QseF/GlrR | 0.48 | OKFHMN_21300 | kgtP | alpha-ketoglutarate permease | low | > 79 |
| Enterobacter asburiae PDN3 | 0.33 | EX28DRAFT_0096 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.49 | EX28DRAFT_0060 | | metabolite-proton symporter | low | > 76 |
| Escherichia coli ECRC101 | 0.33 | MCAODC_12025 | qseF | two-component system response regulator QseF/GlrR | 0.48 | MCAODC_11830 | kgtP | alpha-ketoglutarate permease | low | > 87 |
| Escherichia coli ECRC102 | 0.33 | NIAGMN_19265 | qseF | two-component system response regulator QseF/GlrR | 0.48 | NIAGMN_19070 | kgtP | alpha-ketoglutarate permease | low | > 80 |
| Escherichia coli ECRC99 | 0.33 | KEDOAH_06725 | qseF | two-component system response regulator QseF/GlrR | 0.48 | KEDOAH_06920 | kgtP | alpha-ketoglutarate permease | — | — |
| Escherichia coli ECRC98 | 0.33 | JDDGAC_25160 | qseF | two-component system response regulator QseF/GlrR | 0.48 | JDDGAC_24965 | kgtP | alpha-ketoglutarate permease | low | > 87 |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS04010 | | sigma-54 dependent transcriptional regulator | 0.59 | ABZR86_RS08525 | | MFS transporter | low | > 74 |
Not shown: 27 genomes with orthologs for Atu3296 only; 15 genomes with orthologs for Atu4017 only