Conservation of cofitness between Atu4000 and Atu3999 in Agrobacterium fabrum C58

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu4000 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1.0 Atu3999 dithiobiotin synthetase 0.80 5
Rhizobium sp. OAE497 0.69 ABIE40_RS21060 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.62 ABIE40_RS21065 dethiobiotin synthase low > 107
Rhodopseudomonas palustris CGA009 0.62 TX73_015405 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.55 TX73_015410 dethiobiotin synthase 0.91 2
Sphingomonas koreensis DSMZ 15582 0.54 Ga0059261_3674 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.52 Ga0059261_3673 dethiobiotin synthase low > 68
Synechococcus elongatus PCC 7942 0.40 Synpcc7942_0031 bioA aminotransferase 0.41 Synpcc7942_0030 bioD dethiobiotin synthase — —
Magnetospirillum magneticum AMB-1 0.40 AMB_RS13895 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.38 AMB_RS13890 ATP-dependent dethiobiotin synthetase BioD — —
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS07530 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.44 CA265_RS09760 dethiobiotin synthase low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_02410 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 CA264_02415 dethiobiotin synthase 0.41 60
Rhodanobacter denitrificans MT42 0.35 LRK55_RS03920 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.17 LRK55_RS06915 dethiobiotin synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS04150 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.17 LRK54_RS07180 dethiobiotin synthase low > 59
Marinobacter adhaerens HP15 0.33 HP15_2925 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.19 HP15_2482 dethiobiotin synthetase low > 73
Ralstonia solanacearum PSI07 0.33 RPSI07_RS16705 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.16 RPSI07_RS16695 dethiobiotin synthase low > 81
Ralstonia solanacearum GMI1000 0.33 RS_RS07430 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.14 RS_RS07440 ATP-dependent dethiobiotin synthetase BioD — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS00815 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.16 RALBFv3_RS00825 dethiobiotin synthase — —
Ralstonia solanacearum UW163 0.33 UW163_RS14150 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.16 UW163_RS14160 dethiobiotin synthase — —
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS12335 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.16 ABZR87_RS12345 dethiobiotin synthase low > 80
Fusobacterium nucleatum SB010 0.32 HUW76_05105 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.23 HUW76_05110 dethiobiotin synthase 1.00 2
Pseudomonas putida KT2440 0.32 PP_4984 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.15 PP_0366 dethiobiotin synthetase 0.92 4
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_2377 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.19 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.90 3
Pseudomonas stutzeri RCH2 0.32 Psest_0306 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.16 Psest_0415 dethiobiotin synthase 0.87 5
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS12250 adenosylmethionine--8-amino-7-oxononanoate aminotransferase 0.19 HSERO_RS12255 dethiobiotin synthetase 0.37 2
Pseudomonas sp. S08-1 0.32 OH686_10850 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.18 OH686_10335 dethiobiotin synthase 0.97 5
Pseudomonas fluorescens GW456-L13 0.32 PfGW456L13_1044 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.20 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.98 2
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0454 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme 0.19 Psyr_4683 dethiobiotin synthase 0.82 3
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0454 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme 0.19 Psyr_4683 dethiobiotin synthase 0.72 3
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4631 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) 0.17 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.93 3
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_13570 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.17 AO356_14155 dethiobiotin synthetase 0.92 2
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_08045 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.20 AO353_07505 dethiobiotin synthetase 0.97 3
Pseudomonas simiae WCS417 0.31 PS417_26540 adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.19 PS417_25985 dethiobiotin synthetase 0.67 4
Pseudomonas fluorescens SBW25-INTG 0.31 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.20 PFLU_RS27630 dethiobiotin synthase 0.90 3
Pseudomonas fluorescens SBW25 0.31 PFLU_RS28195 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.20 PFLU_RS27630 dethiobiotin synthase 0.90 2
Lysobacter sp. OAE881 0.31 ABIE51_RS05265 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.14 ABIE51_RS17990 dethiobiotin synthase low > 62
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_05640 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA 0.18 CSW01_05660 dethiobiotin synthase low > 62
Pseudomonas sp. RS175 0.31 PFR28_04208 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.19 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 — —
Serratia liquefaciens MT49 0.30 IAI46_06520 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.20 IAI46_06540 ATP-dependent dethiobiotin synthetase BioD low > 86
Castellaniella sp019104865 MT123 0.30 ABCV34_RS15300 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.33 ABCV34_RS15285 dethiobiotin synthase low > 48
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_2790 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.30 Echvi_0094 dethiobiotin synthase low > 79
Acinetobacter radioresistens SK82 0.29 MPMX26_02454 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.24 MPMX26_02451 ATP-dependent dethiobiotin synthetase BioD 0.89 4
Escherichia coli BW25113 0.29 b0774 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) 0.20 b0778 bioD dethiobiotin synthetase (NCBI) 0.42 7
Escherichia coli ECOR38 0.29 HEPCGN_01635 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.20 HEPCGN_01655 bioD dethiobiotin synthase low > 85
Escherichia coli BL21 0.29 ECD_00741 7,8-diaminopelargonic acid synthase, PLP-dependent 0.21 ECD_00745 dethiobiotin synthetase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_02939 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.21 OHPLBJKB_02935 ATP-dependent dethiobiotin synthetase BioD 1 low > 73
Escherichia fergusonii Becca 0.28 EFB2_03331 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.20 EFB2_03327 ATP-dependent dethiobiotin synthetase BioD 1 low > 86
Escherichia coli Nissle 1917 0.28 ECOLIN_RS04125 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.20 ECOLIN_RS04145 dethiobiotin synthase — —
Escherichia coli ECRC102 0.28 NIAGMN_04450 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.21 NIAGMN_04430 bioD dethiobiotin synthase — —
Escherichia coli ECRC99 0.28 KEDOAH_21505 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.21 KEDOAH_21525 bioD dethiobiotin synthase — —
Escherichia coli ECRC101 0.28 OKFHMN_06405 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.21 OKFHMN_06385 bioD dethiobiotin synthase — —
Escherichia coli ECRC101 0.28 MCAODC_25620 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.21 MCAODC_25600 bioD dethiobiotin synthase — —
Escherichia coli ECOR27 0.28 NOLOHH_22775 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.20 NOLOHH_22755 bioD dethiobiotin synthase low > 57
Escherichia coli ECRC62 0.28 BNILDI_21045 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.20 BNILDI_21025 bioD dethiobiotin synthase — —
Escherichia coli ECRC98 0.28 JDDGAC_10040 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.21 JDDGAC_10020 bioD dethiobiotin synthase — —
Shewanella loihica PV-4 0.27 Shew_1718 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (RefSeq) 0.15 Shew_1722 dethiobiotin synthase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.27 PGA1_c09150 adenosylmethionine-8-amino-7-oxononanoate aminotransferase BioA 0.55 PGA1_c09140 dethiobiotin synthetase BioD 0.57 4

Not shown: 37 genomes with orthologs for Atu4000 only; 1 genomes with orthologs for Atu3999 only