| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E3 | 1.0 | AO353_22890 | | secretion protein HlyD | 1.0 | AO353_15290 | | methyltransferase | 0.35 | 6 |
| Pseudomonas fluorescens GW456-L13 | 0.83 | PfGW456L13_3267 | | RND transporter, membrane fusion protein | 0.94 | PfGW456L13_1643 | | rRNA small subunit methyltransferase I | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.82 | Pf1N1B4_4664 | | RND transporter, membrane fusion protein | 0.93 | Pf1N1B4_953 | | rRNA small subunit methyltransferase I | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.81 | AO356_25870 | | secretion protein HlyD | 0.94 | AO356_17110 | | methyltransferase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.81 | Pf6N2E2_1273 | | Probable RND efflux membrane fusion protein | 0.95 | Pf6N2E2_5346 | | rRNA small subunit methyltransferase I | 0.35 | 19 |
| Pseudomonas sp. RS175 | 0.80 | PFR28_02195 | | Multidrug resistance protein MdtA | 0.96 | PFR28_03597 | | Ribosomal RNA small subunit methyltransferase I | low | > 88 |
| Pseudomonas simiae WCS417 | 0.79 | PS417_12740 | | secretion protein HlyD | 0.90 | PS417_04590 | | methyltransferase | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.78 | PFLU_RS13425 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.91 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.22 | 31 |
| Pseudomonas fluorescens SBW25 | 0.78 | PFLU_RS13425 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.91 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.65 | Psyr_2482 | | Secretion protein HlyD | 0.86 | Psyr_4112 | | Protein of unknown function UPF0011 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.65 | Psyr_2482 | | Secretion protein HlyD | 0.86 | Psyr_4112 | | Protein of unknown function UPF0011 | low | > 86 |
| Pseudomonas putida KT2440 | 0.61 | PP_3585 | | multidrug efflux transport system - putative membrane fusion protein | 0.83 | PP_1326 | | 16S rRNA 2'-O-ribose C1402 methyltransferase | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.55 | Psest_2138 | | RND family efflux transporter, MFP subunit | 0.77 | Psest_3270 | | probable S-adenosylmethionine-dependent methyltransferase, YraL family | low | > 67 |
| Pseudomonas sp. S08-1 | 0.51 | OH686_00920 | | Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA | 0.76 | OH686_08340 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS05510 | | multidrug transporter subunit MdtA | 0.35 | RPSI07_RS08730 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 81 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS21005 | | multidrug transporter subunit MdtA | 0.36 | UW163_RS05115 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS18125 | | multidrug transporter subunit MdtA | 0.36 | RALBFv3_RS08495 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.42 | ABZR87_RS19030 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.35 | ABZR87_RS03815 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS22910 | | multidrug transporter subunit MdtA | 0.35 | RS_RS16360 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS23300 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.42 | QEN71_RS00655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.54 | 25 |
| Enterobacter asburiae PDN3 | 0.40 | EX28DRAFT_0484 | | RND family efflux transporter, MFP subunit | 0.51 | EX28DRAFT_3195 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 76 |
| Pantoea sp. MT58 | 0.40 | IAI47_06875 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.50 | IAI47_02850 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.40 | OHPLBJKB_01630 | | Multidrug resistance protein MdtA | 0.53 | OHPLBJKB_00555 | | Ribosomal RNA small subunit methyltransferase I | low | > 73 |
| Escherichia coli BW25113 | 0.40 | b2074 | b2074 | putative membrane protein (VIMSS) | 0.53 | b3146 | yraL | predicted methyltransferase (NCBI) | 0.17 | 33 |
| Escherichia coli ECRC62 | 0.40 | BNILDI_14460 | mdtA | multidrug efflux RND transporter subunit MdtA | 0.53 | BNILDI_01495 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 75 |
| Escherichia coli ECRC98 | 0.40 | JDDGAC_28310 | mdtA | multidrug efflux RND transporter subunit MdtA | 0.53 | JDDGAC_21860 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 86 |
| Escherichia coli ECRC101 | 0.40 | MCAODC_20740 | mdtA | multidrug efflux RND transporter subunit MdtA | 0.53 | MCAODC_08755 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 87 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_06493 | | membrane fusion protein, multidrug efflux system | 0.37 | H281DRAFT_02152 | | 16S rRNA (cytidine1402-2'-O)-methyltransferase | low | > 103 |
| Escherichia coli BL21 | 0.40 | ECD_01979 | | multidrug efflux system, subunit A | 0.53 | ECD_03013 | | 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent | low | > 61 |
| Escherichia coli ECRC99 | 0.40 | KEDOAH_03950 | mdtA | multidrug efflux RND transporter subunit MdtA | 0.53 | KEDOAH_09915 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | — | — |
| Escherichia coli ECRC100 | 0.40 | OKFHMN_24200 | mdtA | multidrug efflux RND transporter subunit MdtA | 0.53 | OKFHMN_18235 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 80 |
| Escherichia coli ECRC102 | 0.40 | NIAGMN_22145 | mdtA | multidrug efflux RND transporter subunit MdtA | 0.53 | NIAGMN_15995 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | — | — |
| Escherichia coli ECOR38 | 0.39 | HEPCGN_02890 | mdtA | multidrug efflux RND transporter subunit MdtA | 0.53 | HEPCGN_17110 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 87 |
| Enterobacter sp. TBS_079 | 0.39 | MPMX20_03060 | | Multidrug resistance protein MdtA | 0.52 | MPMX20_04050 | | Ribosomal RNA small subunit methyltransferase I | low | > 85 |
| Escherichia coli Nissle 1917 | 0.39 | ECOLIN_RS12195 | | multidrug efflux RND transporter subunit MdtA | 0.53 | ECOLIN_RS18085 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 55 |
| Escherichia coli ECOR27 | 0.39 | NOLOHH_15545 | mdtA | multidrug efflux RND transporter subunit MdtA | 0.53 | NOLOHH_10035 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 75 |
| Escherichia fergusonii Becca | 0.39 | EFB2_01781 | | Multidrug resistance protein MdtA | 0.53 | EFB2_00677 | | Ribosomal RNA small subunit methyltransferase I | low | > 86 |
| Klebsiella michiganensis M5al | 0.39 | BWI76_RS19250 | | multidrug transporter subunit MdtA | 0.51 | BWI76_RS24910 | | rRNA (cytidine-2'-O-)-methyltransferase | low | > 92 |
| Burkholderia phytofirmans PsJN | 0.39 | BPHYT_RS07790 | | RND transporter MFP subunit | 0.40 | BPHYT_RS01940 | | 16S rRNA methyltransferase | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.39 | RR42_RS03315 | | RND transporter MFP subunit | 0.36 | RR42_RS19740 | | 16S rRNA methyltransferase | low | > 128 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.38 | GFF3855 | | Multidrug transporter MdtA | 0.51 | GFF1521 | | rRNA small subunit methyltransferase I | 0.37 | 6 |
| Dickeya dadantii 3937 | 0.38 | DDA3937_RS15260 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.54 | DDA3937_RS01715 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 74 |
| Dickeya dianthicola 67-19 | 0.38 | HGI48_RS15340 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.53 | HGI48_RS01610 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.37 | HER17_RS06325 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.52 | HER17_RS19860 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.37 | LU632_RS08695 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.55 | LU632_RS02230 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 74 |
| Dickeya dianthicola ME23 | 0.36 | DZA65_RS16160 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.53 | DZA65_RS01685 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 75 |
| Rahnella sp. WP5 | 0.36 | EX31_RS13385 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.53 | EX31_RS12550 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 89 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_18970 | | MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit | 0.51 | IAI46_22295 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 86 |
| Castellaniella sp019104865 MT123 | 0.35 | ABCV34_RS14615 | | efflux RND transporter periplasmic adaptor subunit | 0.38 | ABCV34_RS14320 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 48 |
| Variovorax sp. SCN45 | 0.34 | GFF6660 | | Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA | 0.31 | GFF3735 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) | low | > 127 |
| Variovorax sp. OAS795 | 0.33 | ABID97_RS20860 | | efflux RND transporter periplasmic adaptor subunit | 0.33 | ABID97_RS00285 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 91 |
| Rhodopseudomonas palustris CGA009 | 0.32 | TX73_013305 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | TX73_001680 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 86 |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_05478 | | Multidrug resistance protein MdtA | 0.35 | MPMX19_02471 | | Ribosomal RNA small subunit methyltransferase I | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS17375 | | efflux RND transporter periplasmic adaptor subunit | 0.34 | AMB_RS22780 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 64 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.29 | Xcc-8004.4791.1 | | Probable Co/Zn/Cd efflux system membrane fusion protein | 0.51 | Xcc-8004.4371.1 | | rRNA small subunit methyltransferase I | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.28 | ABZR86_RS16315 | | efflux RND transporter periplasmic adaptor subunit | 0.54 | ABZR86_RS11380 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.28 | OKGIIK_16100 | | HlyD-D23 domain-containing protein | 0.52 | OKGIIK_11735 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.26 | LRK55_RS09500 | | efflux RND transporter periplasmic adaptor subunit | 0.52 | LRK55_RS11925 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.26 | LRK54_RS09840 | | efflux RND transporter periplasmic adaptor subunit | 0.52 | LRK54_RS12190 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 59 |
| Bosea sp. OAE506 | 0.21 | ABIE41_RS20145 | | efflux RND transporter periplasmic adaptor subunit | 0.38 | ABIE41_RS03315 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | low | > 77 |
Not shown: 2 genomes with orthologs for AO353_22890 only; 28 genomes with orthologs for AO353_15290 only