Conservation of cofitness between Shewana3_2234 and Shewana3_2452 in Shewanella sp. ANA-3

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella sp. ANA-3 1.0 Shewana3_2234 putative sulfite oxidase subunit YedY (RefSeq) 1.0 Shewana3_2452 dihydrouridine synthase, DuS (RefSeq) 0.47 16
Shewanella oneidensis MR-1 0.97 SO2042 conserved hypothetical protein (NCBI ptt file) 0.97 SO2006 NifR3/Smm1 family protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.71 Shew_2123 putative sulfite oxidase subunit YedY (RefSeq) 0.58 Shew_2242 dihydrouridine synthase, DuS (RefSeq) low > 60
Shewanella amazonensis SB2B 0.69 Sama_1893 putative sulfite oxidase subunit YedY (RefSeq) 0.80 Sama_1303 NifR3/Smm1 family protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.59 MIT1002_02309 Sulfoxide reductase catalytic subunit YedY precursor 0.62 MIT1002_01411 putative tRNA-dihydrouridine synthase low > 70
Rahnella sp. WP5 0.57 EX31_RS12225 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.53 EX31_RS23800 tRNA dihydrouridine(16) synthase DusC low > 89
Escherichia coli ECOR27 0.56 NOLOHH_16185 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.52 NOLOHH_15155 dusC tRNA dihydrouridine(16) synthase DusC low > 57
Serratia liquefaciens MT49 0.56 IAI46_22735 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.52 IAI46_06650 tRNA dihydrouridine(16) synthase DusC low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF2131 Putative sulfite oxidase subunit YedY 0.51 GFF3804 tRNA-dihydrouridine synthase C (EC 1.-.-.-) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_01758 Protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.52 OHPLBJKB_01571 tRNA-dihydrouridine(16) synthase low > 73
Escherichia coli Nissle 1917 0.56 ECOLIN_RS11200 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.52 ECOLIN_RS25475 tRNA dihydrouridine(16) synthase DusC — —
Escherichia fergusonii Becca 0.56 EFB2_01979 Protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.52 EFB2_01716 tRNA-dihydrouridine(16) synthase low > 86
Escherichia coli BL21 0.56 ECD_01886 membrane-anchored, periplasmic TMAO, DMSO reductase 0.52 ECD_02069 tRNA-dihydrouridine synthase C low > 60
Escherichia coli ECOR38 0.56 HEPCGN_03915 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.52 HEPCGN_22850 dusC tRNA dihydrouridine(16) synthase DusC low > 85
Pectobacterium carotovorum WPP14 0.56 HER17_RS20185 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.53 HER17_RS13295 tRNA dihydrouridine(16) synthase DusC low > 75
Escherichia coli ECRC101 0.55 MCAODC_19840 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.53 MCAODC_14665 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli ECRC102 0.55 NIAGMN_02500 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.53 NIAGMN_21380 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli ECRC98 0.55 JDDGAC_00140 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.53 JDDGAC_27570 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli ECRC101 0.55 OKFHMN_25555 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.53 OKFHMN_23615 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli ECRC99 0.55 KEDOAH_02540 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.53 KEDOAH_04570 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli BW25113 0.55 b1971 yedY hypothetical protein (NCBI) 0.52 b2140 dusC tRNA-dihydrouridine synthase C (NCBI) low > 76
Klebsiella michiganensis M5al 0.55 BWI76_RS25515 sulfoxide reductase 0.52 BWI76_RS19565 tRNA dihydrouridine(16) synthase DusC low > 92
Enterobacter asburiae PDN3 0.55 EX28DRAFT_3304 Sulfite oxidase and related enzymes 0.53 EX28DRAFT_0417 tRNA-dihydrouridine synthase low > 76
Pantoea sp. MT58 0.55 IAI47_02425 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.54 IAI47_13430 tRNA dihydrouridine(16) synthase DusC low > 76
Dickeya dianthicola 67-19 0.55 HGI48_RS01335 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.52 HGI48_RS08810 tRNA dihydrouridine(16) synthase DusC low > 71
Escherichia coli ECRC62 0.55 BNILDI_14975 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.53 BNILDI_14105 dusC tRNA dihydrouridine(16) synthase DusC — —
Enterobacter sp. TBS_079 0.55 MPMX20_04160 Protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.52 MPMX20_03112 tRNA-dihydrouridine(16) synthase low > 85
Dickeya dadantii 3937 0.54 DDA3937_RS01415 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.52 DDA3937_RS08715 tRNA dihydrouridine(16) synthase DusC low > 74
Dickeya dianthicola ME23 0.54 DZA65_RS01395 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.51 DZA65_RS09115 tRNA dihydrouridine(16) synthase DusC low > 75
Erwinia tracheiphila SCR3 0.52 LU632_RS21465 msrP protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.53 LU632_RS09220 dusC tRNA dihydrouridine(16) synthase DusC low > 74
Marinobacter adhaerens HP15 0.50 HP15_535 sulfite oxidase subunit YedY 0.45 HP15_1398 tRNA-dihydrouridine synthase C low > 73
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS17940 sulfoxide reductase catalytic subunit YedY 0.45 BPHYT_RS09165 tRNA-dihydrouridine synthase C low > 109
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_1542 Putative sulfite oxidase subunit YedY 0.44 PfGW456L13_3952 tRNA-dihydrouridine synthase C (EC 1.-.-.-) low > 87
Pseudomonas fluorescens SBW25 0.48 PFLU_RS25630 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.46 PFLU_RS20610 tRNA-dihydrouridine synthase family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS25630 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.46 PFLU_RS20610 tRNA-dihydrouridine synthase family protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_2882 Putative sulfite oxidase subunit YedY 0.45 Pf1N1B4_19 tRNA-dihydrouridine synthase C (EC 1.-.-.-) low > 87
Pseudomonas simiae WCS417 0.48 PS417_23790 sulfoxide reductase catalytic subunit YedY 0.46 PS417_18630 tRNA-dihydrouridine synthase C low > 88
Ralstonia solanacearum PSI07 0.48 RPSI07_RS10240 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.44 RPSI07_RS16005 tRNA-dihydrouridine synthase C low > 81
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_0850 Oxidoreductase, molybdopterin binding protein 0.45 Psyr_1979 tRNA-U20a,U20b-dihydrouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_0850 Oxidoreductase, molybdopterin binding protein 0.45 Psyr_1979 tRNA-U20a,U20b-dihydrouridine synthase low > 86
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_14515 sulfoxide reductase catalytic subunit YedY 0.46 AO353_20600 tRNA-dihydrouridine synthase C low > 101
Pseudomonas sp. RS175 0.47 PFR28_03695 Protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.46 PFR28_02828 tRNA-dihydrouridine(16) synthase low > 88
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_5179 Putative sulfite oxidase subunit YedY 0.45 Pf6N2E2_58 tRNA-dihydrouridine synthase C (EC 1.-.-.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_16190 sulfoxide reductase catalytic subunit YedY 0.46 AO356_21380 tRNA-dihydrouridine synthase C low > 104
Pseudomonas putida KT2440 0.46 PP_4676 methionine sulfoxide reductase catalytic subunit 0.47 PP_1981 tRNA-dihydrouridine synthase C low > 96
Pseudomonas stutzeri RCH2 0.46 Psest_1040 Sulfite oxidase and related enzymes 0.46 Psest_2595 tRNA-dihydrouridine synthase low > 67
Ralstonia solanacearum GMI1000 0.46 RS_RS14940 mononuclear molybdenum enzyme YedY 0.46 RS_RS08240 tRNA-dihydrouridine synthase C low > 80
Pseudomonas sp. S08-1 0.46 OH686_08105 Protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.49 OH686_04505 tRNA-dihydrouridine(16) synthase low > 80
Dechlorosoma suillum PS 0.45 Dsui_1300 sulfite oxidase-like oxidoreductase 0.42 Dsui_2334 tRNA-dihydrouridine synthase low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF1348 Putative sulfite oxidase subunit YedY 0.47 GFF3560 tRNA-dihydrouridine synthase C (EC 1.-.-.-) low > 90
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS02650 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.46 ABZR87_RS13280 tRNA-dihydrouridine synthase low > 80
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS19060 sulfoxide reductase catalytic subunit YedY 0.43 RR42_RS07625 dihydrouridine synthase low > 128
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS07000 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.42 RALBFv3_RS01485 dihydrouridine synthase low > 76
Ralstonia solanacearum UW163 0.45 UW163_RS06615 protein-methionine-sulfoxide reductase catalytic subunit MsrP 0.42 UW163_RS14795 dihydrouridine synthase — —
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2976 Putative sulfite oxidase subunit YedY 0.43 Ac3H11_1465 tRNA-dihydrouridine synthase C (EC 1.-.-.-) low > 79

Not shown: 21 genomes with orthologs for Shewana3_2234 only; 2 genomes with orthologs for Shewana3_2452 only