Conservation of cofitness between Sama_2368 and Sama_3335 in Shewanella amazonensis SB2B

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_2368 hypothetical protein (RefSeq) 1.0 Sama_3335 potE putrescine transporter (RefSeq) 0.69 2
Shewanella sp. ANA-3 0.92 Shewana3_1226 hypothetical protein (RefSeq) 0.90 Shewana3_3872 potE putrescine transporter (RefSeq) low > 73
Shewanella oneidensis MR-1 0.92 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) 0.90 SO0313 potE putrescine-ornithine antiporter (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.75 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.77 IAI46_02035 putrescine-ornithine antiporter low > 86
Enterobacter asburiae PDN3 0.75 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.77 EX28DRAFT_2286 putrescine-ornithine antiporter low > 76
Enterobacter sp. TBS_079 0.75 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN 0.76 MPMX20_01335 Putrescine transporter PotE low > 85
Escherichia coli BL21 0.75 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent 0.77 ECD_00648 putrescine/proton symporter: putrescine/ornithine antiporter low > 60
Escherichia coli ECOR38 0.75 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.77 HEPCGN_01140 potE putrescine-ornithine antiporter low > 85
Escherichia coli BW25113 0.75 b2517 yfgB predicted enzyme (NCBI) 0.77 b0692 potE putrescine/proton symporter: putrescine/ornithine antiporter (NCBI) low > 76
Escherichia coli ECOR27 0.75 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.77 NOLOHH_23475 potE putrescine-ornithine antiporter low > 57
Escherichia coli ECRC62 0.75 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.77 BNILDI_21480 potE putrescine-ornithine antiporter — —
Escherichia fergusonii Becca 0.75 EFB2_01373 Dual-specificity RNA methyltransferase RlmN 0.77 EFB2_03405 Putrescine transporter PotE low > 86
Escherichia coli ECRC102 0.75 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.77 NIAGMN_05150 potE putrescine-ornithine antiporter — —
Escherichia coli ECRC101 0.75 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.77 OKFHMN_07095 potE putrescine-ornithine antiporter — —
Escherichia coli ECRC98 0.75 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.77 JDDGAC_10745 potE putrescine-ornithine antiporter — —
Escherichia coli ECRC101 0.75 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.77 MCAODC_26310 potE putrescine-ornithine antiporter — —
Escherichia coli ECRC99 0.75 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.77 KEDOAH_20875 potE putrescine-ornithine antiporter — —
Escherichia coli Nissle 1917 0.74 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.77 ECOLIN_RS03735 putrescine-ornithine antiporter low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN 0.30 OHPLBJKB_03929 Arginine/agmatine antiporter low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.77 GFF4603 Putrescine/proton symporter, putrescine/ornithine antiporter PotE low > 78
Klebsiella michiganensis M5al 0.74 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.23 BWI76_RS07190 lysine/cadaverine antiporter low > 92
Pantoea sp. MT58 0.73 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.10 IAI47_09555 amino acid permease low > 76
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.90 CSW01_19400 putrescine-ornithine antiporter low > 62
Pseudomonas sp. S08-1 0.56 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.51 OH686_07040 Putrescine/proton symporter, putrescine/ornithine antiporter PotE low > 80
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase 0.11 AO353_03465 arginine-ornithine antiporter low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.09 Psyr_2683 arginine:ornithine antiporter, APA family low > 86
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.09 Psyr_2683 arginine:ornithine antiporter, APA family low > 86
Pseudomonas simiae WCS417 0.55 PS417_23160 50S rRNA methyltransferase 0.11 PS417_22325 amino acid APC transporter low > 88
Pseudomonas fluorescens SBW25 0.54 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.11 PFLU_RS23965 arginine-ornithine antiporter low > 109
Pseudomonas fluorescens SBW25-INTG 0.54 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.11 PFLU_RS23965 arginine-ornithine antiporter low > 109
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase 0.09 AO356_05265 arginine-ornithine antiporter low > 104
Pseudomonas putida KT2440 0.54 PP_0850 Dual-specificity RNA methyltransferase RlmN 0.10 PP_1002 arginine/ornithine antiporter low > 96
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN 0.08 BPHYT_RS27675 amino acid APC transporter low > 109
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.10 Pf6N2E2_2907 Arginine/ornithine antiporter ArcD — —
Pseudomonas stutzeri RCH2 0.54 Psest_1259 23S rRNA m2A2503 methyltransferase 0.08 Psest_0273 arginine/ornithine antiporter low > 67
Pseudomonas sp. RS175 0.54 PFR28_00294 Dual-specificity RNA methyltransferase RlmN 0.10 PFR28_02177 Arginine/ornithine antiporter — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.64 PfGW456L13_3775 Putrescine/proton symporter, putrescine/ornithine antiporter PotE low > 87
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.51 Pf1N1B4_4994 Putrescine/proton symporter, putrescine/ornithine antiporter PotE — —
Rhodanobacter denitrificans MT42 0.53 LRK55_RS18065 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.19 LRK55_RS04305 amino acid permease low > 63
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS00070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.19 LRK54_RS04530 amino acid permease low > 59
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.17 ABZR86_RS00365 amino acid permease low > 74
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_07140 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.18 OKGIIK_11355 Amino acid permease low > 52
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.2737.1 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.07 Xcc-8004.4819.1 Amino acid permease low > 74
Lysobacter sp. OAE881 0.48 ABIE51_RS09415 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.19 ABIE51_RS14640 amino acid permease low > 62
Caulobacter crescentus NA1000 0.42 CCNA_00133 radical SAM family enzyme 0.17 CCNA_03226 basic amino acid/polyamine antiporter (APA) family transporter low > 66
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_00133 radical SAM family enzyme 0.17 CCNA_03226 basic amino acid/polyamine antiporter (APA) family transporter low > 67
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_1407 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.12 Ga0059261_0539 Amino acid transporters low > 68
Rhizobium sp. OAE497 0.40 ABIE40_RS18200 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.55 ABIE40_RS23770 putrescine-ornithine antiporter low > 107
Sinorhizobium meliloti 1021 0.40 SMc03831 hypothetical protein 0.56 SMa0678 putrescine transporter low > 103
Fusobacterium nucleatum SB010 0.31 HUW76_07445 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.08 HUW76_07530 APC family permease low > 35

Not shown: 51 genomes with orthologs for Sama_2368 only; 3 genomes with orthologs for Sama_3335 only