Conservation of cofitness between Sama_2368 and Sama_2268 in Shewanella amazonensis SB2B

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_2368 hypothetical protein (RefSeq) 1.0 Sama_2268 vacJ lipoprotein, putative (RefSeq) 0.53 16
Shewanella loihica PV-4 0.93 Shew_1287 hypothetical protein (RefSeq) 0.71 Shew_1395 VacJ family lipoprotein (RefSeq) low > 60
Shewanella sp. ANA-3 0.92 Shewana3_1226 hypothetical protein (RefSeq) 0.72 Shewana3_1371 VacJ family lipoprotein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.92 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) 0.71 SO3197 vacJ lipoprotein, putative (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.75 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.29 EX28DRAFT_0267 Surface lipoprotein low > 76
Serratia liquefaciens MT49 0.75 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.31 IAI46_18065 phospholipid-binding lipoprotein MlaA low > 86
Enterobacter sp. TBS_079 0.75 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN 0.30 MPMX20_03272 Intermembrane phospholipid transport system lipoprotein MlaA low > 85
Dickeya dadantii 3937 0.75 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.30 DDA3937_RS14625 phospholipid-binding lipoprotein MlaA low > 74
Escherichia coli BL21 0.75 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent 0.29 ECD_02272 ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component low > 60
Escherichia coli ECOR38 0.75 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 HEPCGN_21730 mlaA phospholipid-binding lipoprotein MlaA low > 85
Escherichia coli BW25113 0.75 b2517 yfgB predicted enzyme (NCBI) 0.29 b2346 vacJ predicted lipoprotein (NCBI) low > 76
Escherichia fergusonii Becca 0.75 EFB2_01373 Dual-specificity RNA methyltransferase RlmN 0.29 EFB2_01514 Intermembrane phospholipid transport system lipoprotein MlaA 0.53 54
Escherichia coli ECOR27 0.75 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 NOLOHH_14170 mlaA phospholipid-binding lipoprotein MlaA low > 57
Escherichia coli ECRC62 0.75 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 BNILDI_13080 mlaA phospholipid-binding lipoprotein MlaA — —
Rahnella sp. WP5 0.75 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.30 EX31_RS19725 phospholipid-binding lipoprotein MlaA low > 89
Escherichia coli ECRC102 0.75 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 NIAGMN_20310 mlaA phospholipid-binding lipoprotein MlaA — —
Escherichia coli ECRC98 0.75 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 JDDGAC_26495 mlaA phospholipid-binding lipoprotein MlaA — —
Erwinia tracheiphila SCR3 0.75 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 LU632_RS07300 mlaA phospholipid-binding lipoprotein MlaA low > 74
Escherichia coli ECRC99 0.75 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 KEDOAH_05660 mlaA phospholipid-binding lipoprotein MlaA — —
Escherichia coli ECRC101 0.75 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 MCAODC_13565 mlaA phospholipid-binding lipoprotein MlaA — —
Escherichia coli ECRC101 0.75 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 OKFHMN_22535 mlaA phospholipid-binding lipoprotein MlaA — —
Escherichia coli Nissle 1917 0.74 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 ECOLIN_RS13570 phospholipid-binding lipoprotein MlaA low > 52
Pectobacterium carotovorum WPP14 0.74 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 HER17_RS06855 phospholipid-binding lipoprotein MlaA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN 0.29 OHPLBJKB_01360 putative phospholipid-binding lipoprotein MlaA low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.30 GFF1958 Lipoprotein low > 78
Dickeya dianthicola ME23 0.74 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 DZA65_RS15515 phospholipid-binding lipoprotein MlaA low > 75
Dickeya dianthicola 67-19 0.74 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 HGI48_RS14575 phospholipid-binding lipoprotein MlaA low > 71
Klebsiella michiganensis M5al 0.74 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.28 BWI76_RS20475 phospholipid-binding lipoprotein MlaA low > 92
Pantoea sp. MT58 0.73 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.29 IAI47_06110 phospholipid-binding lipoprotein MlaA low > 76
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.36 CSW01_10245 ABC transporter low > 62
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase 0.28 B158DRAFT_1335 Surface lipoprotein low > 40
Dechlorosoma suillum PS 0.57 Dsui_3145 23S rRNA m2A2503 methyltransferase 0.26 Dsui_1401 surface lipoprotein — —
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.25 ABZR87_RS02540 VacJ family lipoprotein low > 80
Ralstonia solanacearum GMI1000 0.55 RS_RS06070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.24 RS_RS14830 ABC transporter low > 80
Ralstonia solanacearum PSI07 0.55 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.23 RPSI07_RS10350 ABC transporter low > 81
Ralstonia solanacearum UW163 0.55 UW163_RS12725 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.24 UW163_RS06730 ABC transporter — —
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.25 Psyr_1910 VacJ-like lipoprotein low > 86
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS15260 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.24 RALBFv3_RS06885 ABC transporter — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.25 Psyr_1910 VacJ-like lipoprotein low > 86
Pseudomonas putida KT2440 0.54 PP_0850 Dual-specificity RNA methyltransferase RlmN 0.23 PP_2163 VacJ lipoprotein low > 96
Pseudomonas stutzeri RCH2 0.54 Psest_1259 23S rRNA m2A2503 methyltransferase 0.22 Psest_2712 Surface lipoprotein low > 67
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS14810 50S rRNA methyltransferase 0.24 HSERO_RS20385 ABC transporter — —
Variovorax sp. SCN45 0.54 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.22 GFF5337 Outer-membrane-phospholipid-binding lipoprotein MlaA low > 127
Marinobacter adhaerens HP15 0.53 HP15_1490 conserved hypothetical protein 0.22 HP15_1860 VacJ family lipoprotein low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.22 GFF1322 Nucleoside ABC transporter, periplasmic nucleoside-binding protein low > 90
Variovorax sp. OAS795 0.53 ABID97_RS14210 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.23 ABID97_RS23200 VacJ family lipoprotein low > 91
Rhodanobacter denitrificans MT42 0.53 LRK55_RS18065 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.23 LRK55_RS11510 VacJ family lipoprotein low > 63
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS00070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.24 LRK54_RS11785 VacJ family lipoprotein low > 59
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.25 ABZR86_RS11860 VacJ family lipoprotein low > 74
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_07140 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.24 OKGIIK_12110 ABC transporter low > 52
Azospirillum brasilense Sp245 0.44 AZOBR_RS00800 50S rRNA methyltransferase 0.20 AZOBR_RS09530 VacJ-like lipoprotein low > 97
Phaeobacter inhibens DSM 17395 0.44 PGA1_c36240 ribosomal RNA large subunit methyltransferase N 0.17 PGA1_c29360 VacJ-like lipoprotein low > 62
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_00133 radical SAM family enzyme 0.19 CCNA_03806 outer membrane lipoprotein low > 67
Caulobacter crescentus NA1000 0.42 CCNA_00133 radical SAM family enzyme 0.19 CCNA_03806 outer membrane lipoprotein low > 66

Not shown: 47 genomes with orthologs for Sama_2368 only; 0 genomes with orthologs for Sama_2268 only