Conservation of cofitness between BT0650 and BT3394 in Bacteroides thetaiotaomicron VPI-5482

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT0650 thiamine biosynthesis protein ThiC (NCBI ptt file) 1.0 BT3394 putative arginine decarboxylase (NCBI ptt file) 0.46 15
Bacteroides ovatus ATCC 8483 0.98 BACOVA_02358 thiamine biosynthesis protein ThiC 0.99 BACOVA_01911 arginine 2-monooxygenase low > 94
Bacteroides stercoris CC31F 0.92 HMPREF1181_RS14685 phosphomethylpyrimidine synthase ThiC 0.93 HMPREF1181_RS02535 biosynthetic arginine decarboxylase low > 56
Phocaeicola vulgatus CL09T03C04 0.87 HMPREF1058_RS03280 phosphomethylpyrimidine synthase ThiC 0.92 HMPREF1058_RS12110 biosynthetic arginine decarboxylase low > 67
Phocaeicola dorei CL03T12C01 0.86 ABI39_RS17760 phosphomethylpyrimidine synthase ThiC 0.92 ABI39_RS04690 biosynthetic arginine decarboxylase low > 72
Parabacteroides merdae CL09T00C40 0.72 HMPREF1078_RS03485 phosphomethylpyrimidine synthase ThiC 0.91 HMPREF1078_RS15005 biosynthetic arginine decarboxylase low > 61
Marinobacter adhaerens HP15 0.65 HP15_453 thiamine biosynthesis protein thiC 0.41 HP15_272 biosynthetic arginine decarboxylase low > 73
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS17230 phosphomethylpyrimidine synthase ThiC 0.39 ABZR86_RS15580 biosynthetic arginine decarboxylase — —
Shewanella loihica PV-4 0.65 Shew_2096 thiamine biosynthesis protein ThiC (RefSeq) 0.42 Shew_1619 arginine decarboxylase (RefSeq) — —
Shewanella amazonensis SB2B 0.65 Sama_1860 thiamine biosynthesis protein ThiC (RefSeq) 0.41 Sama_1963 arginine decarboxylase (RefSeq) low > 62
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_16965 thiC phosphomethylpyrimidine synthase ThiC 0.40 OKGIIK_15625 speA biosynthetic arginine decarboxylase — —
Dickeya dadantii 3937 0.64 DDA3937_RS01175 phosphomethylpyrimidine synthase ThiC 0.42 DDA3937_RS18535 biosynthetic arginine decarboxylase low > 74
Pectobacterium carotovorum WPP14 0.64 HER17_RS20380 phosphomethylpyrimidine synthase ThiC 0.43 HER17_RS02665 biosynthetic arginine decarboxylase low > 75
Pseudomonas sp. S08-1 0.64 OH686_15885 phosphomethylpyrimidine synthase 0.39 OH686_07545 arginine decarboxylase low > 80
Pseudomonas stutzeri RCH2 0.64 Psest_0477 thiamine biosynthesis protein ThiC 0.39 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 67
Pseudomonas putida KT2440 0.64 PP_4922 Phosphomethylpyrimidine synthase 0.38 PP_0567 Biosynthetic arginine decarboxylase low > 96
Dickeya dianthicola ME23 0.64 DZA65_RS01215 phosphomethylpyrimidine synthase ThiC 0.42 DZA65_RS19595 biosynthetic arginine decarboxylase low > 75
Escherichia coli ECRC62 0.63 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC 0.42 BNILDI_09755 speA biosynthetic arginine decarboxylase — —
Escherichia coli BW25113 0.63 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) 0.42 b2938 speA arginine decarboxylase (NCBI) low > 76
Escherichia coli ECOR27 0.63 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC 0.42 NOLOHH_11175 speA biosynthetic arginine decarboxylase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_04056 Phosphomethylpyrimidine synthase 0.42 OHPLBJKB_00778 Biosynthetic arginine decarboxylase low > 73
Escherichia coli ECRC99 0.63 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC 0.42 KEDOAH_08835 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC101 0.63 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC 0.42 OKFHMN_19305 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECOR38 0.63 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC 0.42 HEPCGN_18610 speA biosynthetic arginine decarboxylase low > 85
Escherichia coli ECRC98 0.63 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC 0.42 JDDGAC_22935 speA biosynthetic arginine decarboxylase — —
Escherichia coli Nissle 1917 0.63 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC 0.42 ECOLIN_RS16350 biosynthetic arginine decarboxylase low > 52
Pseudomonas simiae WCS417 0.63 PS417_02355 thiamine biosynthesis protein ThiC 0.39 PS417_03005 arginine decarboxylase low > 88
Escherichia coli ECRC101 0.63 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC 0.42 MCAODC_09825 speA biosynthetic arginine decarboxylase — —
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.39 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 103
Escherichia fergusonii Becca 0.63 EFB2_04617 Phosphomethylpyrimidine synthase 0.42 EFB2_00962 Biosynthetic arginine decarboxylase low > 86
Rahnella sp. WP5 0.63 EX31_RS16815 phosphomethylpyrimidine synthase ThiC 0.42 EX31_RS21355 biosynthetic arginine decarboxylase low > 89
Serratia liquefaciens MT49 0.63 IAI46_01320 phosphomethylpyrimidine synthase ThiC 0.42 IAI46_21140 biosynthetic arginine decarboxylase low > 86
Escherichia coli ECRC102 0.63 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC 0.42 NIAGMN_17070 speA biosynthetic arginine decarboxylase — —
Dickeya dianthicola 67-19 0.63 HGI48_RS01170 phosphomethylpyrimidine synthase ThiC 0.42 HGI48_RS18460 biosynthetic arginine decarboxylase low > 71
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_08810 thiamine biosynthesis protein ThiC 0.38 AO356_08155 arginine decarboxylase low > 104
Pantoea sp. MT58 0.63 IAI47_18085 phosphomethylpyrimidine synthase ThiC 0.42 IAI47_03660 biosynthetic arginine decarboxylase low > 76
Escherichia coli BL21 0.63 ECD_03871 phosphomethylpyrimidine synthase 0.42 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding low > 60
Pseudomonas fluorescens SBW25 0.63 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.39 PFLU_RS03080 arginine decarboxylase 0.69 94
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS02430 phosphomethylpyrimidine synthase ThiC 0.39 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_0544 hydroxymethylpyrimidine synthase 0.38 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_0544 hydroxymethylpyrimidine synthase 0.38 Psyr_4381 arginine decarboxylase low > 86
Alteromonas macleodii MIT1002 0.63 MIT1002_00097 Phosphomethylpyrimidine synthase 0.45 MIT1002_03905 Biosynthetic arginine decarboxylase low > 70
Enterobacter asburiae PDN3 0.63 EX28DRAFT_4536 phosphomethylpyrimidine synthase 0.42 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) low > 76
Pseudomonas sp. RS175 0.63 PFR28_05091 Phosphomethylpyrimidine synthase 0.39 PFR28_05228 Biosynthetic arginine decarboxylase low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF4198 Thiamin biosynthesis protein ThiC 0.42 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 78
Enterobacter sp. TBS_079 0.63 MPMX20_00217 Phosphomethylpyrimidine synthase 0.42 MPMX20_03799 Biosynthetic arginine decarboxylase low > 85
Pseudomonas fluorescens FW300-N2E3 0.63 AO353_13010 thiamine biosynthesis protein ThiC 0.38 AO353_13720 arginine decarboxylase low > 101
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_187 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.39 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 87
Pseudomonas fluorescens FW300-N1B4 0.63 Pf1N1B4_1447 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) 0.39 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 87
Erwinia tracheiphila SCR3 0.63 LU632_RS00970 thiC phosphomethylpyrimidine synthase ThiC 0.41 LU632_RS05510 speA biosynthetic arginine decarboxylase low > 74
Lysobacter sp. OAE881 0.62 ABIE51_RS17515 phosphomethylpyrimidine synthase ThiC 0.39 ABIE51_RS00125 arginine decarboxylase — —
Shewanella sp. ANA-3 0.62 Shewana3_1936 thiamine biosynthesis protein ThiC (RefSeq) 0.42 Shewana3_1624 arginine decarboxylase (RefSeq) low > 73
Klebsiella michiganensis M5al 0.62 BWI76_RS01555 phosphomethylpyrimidine synthase ThiC 0.42 BWI76_RS24030 arginine decarboxylase low > 92
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.1066.1 hypothetical protein 0.41 Xcc-8004.4909.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) — —
Shewanella oneidensis MR-1 0.62 SO2445 thiC thiamin biosynthesis protein ThiC (NCBI ptt file) 0.42 SO1870 speA biosynthetic arginine decarboxylase (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_00335 phosphomethylpyrimidine synthase 0.40 CSW01_18235 arginine decarboxylase low > 62
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_0295 hydroxymethylpyrimidine synthase 0.42 B158DRAFT_1811 arginine decarboxylase (EC 4.1.1.19) low > 40

Not shown: 37 genomes with orthologs for BT0650 only; 5 genomes with orthologs for BT3394 only