Conservation of cofitness between SO2105 and SO2615 in Shewanella oneidensis MR-1

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO2105 sensor protein YgiY, putative (NCBI ptt file) 1.0 SO2615 pabC 4-amino-4-deoxychorismate lyase (NCBI ptt file) 0.31 7
Shewanella sp. ANA-3 0.83 Shewana3_1886 ATPase domain-containing protein (RefSeq) 0.88 Shewana3_1764 aminodeoxychorismate lyase apoprotein (RefSeq) — —
Pseudomonas segetis P6 0.21 MPMX49_03736 Sensor protein QseC 0.30 MPMX49_02083 Aminodeoxychorismate lyase low > 75
Marinobacter adhaerens HP15 0.20 HP15_3967 integral membrane sensor signal transduction histidine kinase 0.21 HP15_2209 4-amino-4-deoxychorismate lyase low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.20 Psyr_3512 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal 0.29 Psyr_1650 aminodeoxychorismate lyase apoprotein low > 86
Pseudomonas syringae pv. syringae B728a 0.20 Psyr_3512 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal 0.29 Psyr_1650 aminodeoxychorismate lyase apoprotein low > 86
Pseudomonas fluorescens FW300-N2C3 0.20 AO356_27275 histidine kinase 0.31 AO356_20180 4-amino-4-deoxychorismate lyase low > 104
Pseudomonas fluorescens SBW25 0.19 PFLU_RS25080 two-component sensor histidine kinase 0.27 PFLU_RS23040 aminodeoxychorismate lyase low > 109
Pseudomonas fluorescens SBW25-INTG 0.19 PFLU_RS25080 two-component sensor histidine kinase 0.27 PFLU_RS23040 aminodeoxychorismate lyase low > 109
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_1538 Sensory histidine kinase QseC 0.29 Pf6N2E2_5955 Aminodeoxychorismate lyase (EC 4.1.3.38) low > 103
Pseudomonas sp. S08-1 0.18 OH686_04660 hypothetical protein 0.31 OH686_22155 aminodeoxychorismate lyase low > 80
Pseudomonas simiae WCS417 0.18 PS417_13590 histidine kinase 0.26 PS417_21425 4-amino-4-deoxychorismate lyase low > 88
Pseudomonas sp. RS175 0.18 PFR28_02327 Adaptive-response sensory-kinase SasA 0.30 PFR28_03007 Aminodeoxychorismate lyase low > 88
Pseudomonas putida KT2440 0.18 PP_2714 Sensor histidine kinase 0.28 PP_1917 4-amino-4-deoxychorismate lyase low > 96
Pantoea agglomerans CFBP13505 P0401 0.18 PagCFBP13505_RS19000 two-component system sensor histidine kinase QseC 0.29 PagCFBP13505_RS05280 aminodeoxychorismate lyase low > 74
Pseudomonas sp. SVBP6 0.18 COO64_RS20760 ATP-binding protein 0.28 COO64_RS05790 pabC aminodeoxychorismate lyase low > 93
Pseudomonas fluorescens GW456-L13 0.18 PfGW456L13_3168 Sensory histidine kinase QseC 0.29 PfGW456L13_2108 Aminodeoxychorismate lyase (EC 4.1.3.38) low > 87
Pseudomonas fluorescens FW300-N1B4 0.18 Pf1N1B4_4453 Sensory histidine kinase QseC 0.28 Pf1N1B4_448 Aminodeoxychorismate lyase (EC 4.1.3.38) low > 87
Pseudomonas sp. BP01 0.18 JOY50_RS03365 ATP-binding protein 0.27 JOY50_RS16775 pabC aminodeoxychorismate lyase — —
Pectobacterium carotovorum WPP14 0.17 HER17_RS21565 two-component system sensor histidine kinase QseC 0.32 HER17_RS08665 aminodeoxychorismate lyase low > 75
Serratia liquefaciens MT49 0.17 IAI46_21230 two-component system sensor histidine kinase QseC 0.31 IAI46_09805 aminodeoxychorismate lyase low > 87
Pseudomonas sp. DMC3 0.17 GFF3604 Sensor protein QseC 0.29 GFF4754 Aminodeoxychorismate lyase low > 89
Pantoea sp. MT58 0.17 IAI47_00335 two-component system sensor histidine kinase QseC 0.29 IAI47_12055 aminodeoxychorismate lyase low > 76
Escherichia coli Nissle 1917 0.17 ECOLIN_RS17430 quorum sensing histidine kinase QseC 0.29 ECOLIN_RS06330 aminodeoxychorismate lyase low > 55
Pseudomonas stutzeri RCH2 0.16 Psest_3477 Signal transduction histidine kinase 0.28 Psest_1691 aminodeoxychorismate lyase low > 67
Escherichia fergusonii Becca 0.16 EFB2_00787 Sensor protein QseC 0.29 EFB2_02879 Aminodeoxychorismate lyase low > 86
Escherichia coli BL21 0.16 ECD_02898 quorum sensing sensory histidine kinase in two-component regulatory system with QseB 0.29 ECD_01092 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex — —
Escherichia coli BW25113 0.16 b3026 qseC sensory histidine kinase in two-component regulatory system with QseB (NCBI) 0.30 b1096 pabC 4-amino-4-deoxychorismate lyase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_00676 Sensor protein QseC 0.29 OHPLBJKB_02570 Aminodeoxychorismate lyase low > 74
Escherichia coli ECRC99 0.16 KEDOAH_09270 qseC two-component system sensor histidine kinase QseC 0.30 KEDOAH_24195 pabC aminodeoxychorismate lyase — —
Escherichia coli ECRC98 0.16 JDDGAC_22510 qseC two-component system sensor histidine kinase QseC 0.30 JDDGAC_07220 pabC aminodeoxychorismate lyase low > 87
Escherichia coli ECRC100 0.16 OKFHMN_18875 qseC two-component system sensor histidine kinase QseC 0.30 OKFHMN_03560 pabC aminodeoxychorismate lyase low > 79
Escherichia coli ECRC102 0.16 NIAGMN_16640 qseC two-component system sensor histidine kinase QseC 0.30 NIAGMN_24270 pabC aminodeoxychorismate lyase — —
Escherichia coli ECRC101 0.16 MCAODC_09390 qseC two-component system sensor histidine kinase QseC 0.30 MCAODC_22920 pabC aminodeoxychorismate lyase low > 87
Escherichia coli ECRC62 0.16 BNILDI_00860 qseC two-component system sensor histidine kinase QseC 0.29 BNILDI_19250 pabC aminodeoxychorismate lyase low > 75
Escherichia coli ECOR27 0.16 NOLOHH_10655 qseC two-component system sensor histidine kinase QseC 0.29 NOLOHH_21090 pabC aminodeoxychorismate lyase low > 76
Escherichia coli ECOR38 0.16 HEPCGN_17735 qseC two-component system sensor histidine kinase QseC 0.29 HEPCGN_23920 pabC aminodeoxychorismate lyase low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF3139 Sensory histidine kinase QseC 0.27 GFF3378 Aminodeoxychorismate lyase (EC 4.1.3.38) low > 78
Rhodanobacter denitrificans MT42 0.15 LRK55_RS13870 ATP-binding protein 0.29 LRK55_RS00940 aminodeoxychorismate lyase low > 63
Rhodanobacter denitrificans FW104-10B01 0.15 LRK54_RS14150 ATP-binding protein 0.29 LRK54_RS01165 aminodeoxychorismate lyase low > 59
Klebsiella pneumoniae MKP103 0.15 KDGMDA_05185 two-component system sensor histidine kinase QseC 0.31 KDGMDA_18710 aminodeoxychorismate lyase low > 95
Vibrio cholerae E7946 ATCC 55056 0.15 CSW01_19590 two-component sensor histidine kinase 0.29 CSW01_10080 4-amino-4-deoxychorismate lyase low > 62
Lysobacter sp. OAE881 0.15 ABIE51_RS00880 ATP-binding protein 0.26 ABIE51_RS13925 aminodeoxychorismate lyase low > 62
Castellaniella sp019104865 MT123 0.15 ABCV34_RS11765 ATP-binding protein 0.12 ABCV34_RS14450 D-amino acid aminotransferase low > 48
Rhodanobacter sp. FW510-T8 0.15 OKGIIK_00865 Sensor protein QseC 0.27 OKGIIK_05735 pabC aminodeoxychorismate lyase low > 53
Klebsiella michiganensis M5al 0.14 BWI76_RS24340 two-component sensor histidine kinase 0.29 BWI76_RS11105 aminodeoxychorismate lyase low > 92
Acinetobacter radioresistens SK82 0.14 MPMX26_00654 Sensor protein QseC 0.20 MPMX26_02165 Aminodeoxychorismate lyase low > 36
Dickeya dianthicola 67-19 0.14 HGI48_RS21350 two-component system sensor histidine kinase QseC 0.28 HGI48_RS13170 aminodeoxychorismate lyase low > 71
Rhodanobacter sp000427505 FW510-R12 0.14 LRK53_RS14455 ATP-binding protein 0.27 LRK53_RS08905 aminodeoxychorismate lyase low > 59
Dickeya dianthicola ME23 0.14 DZA65_RS22330 two-component system sensor histidine kinase QseC 0.28 DZA65_RS13640 aminodeoxychorismate lyase low > 75
Dyella japonica UNC79MFTsu3.2 0.14 ABZR86_RS01265 ATP-binding protein 0.28 ABZR86_RS06150 aminodeoxychorismate lyase — —
Burkholderia phytofirmans PsJN 0.14 BPHYT_RS10855 histidine kinase 0.10 BPHYT_RS02420 cytochrome C550 low > 109
Enterobacter sp. TBS_079 0.14 MPMX20_03864 Sensor protein QseC 0.25 MPMX20_01776 Aminodeoxychorismate lyase low > 85
Ralstonia sp. UNC404CL21Col 0.13 ABZR87_RS22885 ATP-binding protein 0.09 ABZR87_RS20740 D-amino-acid transaminase low > 80
Acinetobacter baumannii LAC-4 0.13 RR41_RS03775 two-component system sensor histidine kinase PmrB 0.17 RR41_RS04800 aminodeoxychorismate lyase low > 55
Cupriavidus basilensis FW507-4G11 0.12 RR42_RS19990 histidine kinase 0.09 RR42_RS22950 cytochrome C550 low > 128
Pseudomonas aeruginosa PA14 0.11 IKLFDK_29705 two-component system sensor histidine kinase PmrB 0.31 IKLFDK_15080 aminodeoxychorismate lyase — —
Pseudomonas aeruginosa PUPa3 0.11 DQ20_RS52400 pmrB;inference=COORDINATES two-component system sensor histidine kinase PmrB 0.31 DQ20_RS33430 pabC;go_function=4-amino-4-deoxychorismate aminodeoxychorismate lyase low > 101
Pseudomonas aeruginosa MRSN321 0.11 DY961_RS09645 pmrB;inference=COORDINATES two-component system sensor histidine kinase PmrB 0.31 DY961_RS02155 pabC;go_function=4-amino-4-deoxychorismate aminodeoxychorismate lyase low > 100
Brevundimonas sp. GW460-12-10-14-LB2 0.11 A4249_RS11490 sensor histidine kinase N-terminal domain-containing protein 0.14 A4249_RS09820 branched-chain amino acid aminotransferase — —
Magnetospirillum magneticum AMB-1 0.10 AMB_RS16370 two-component sensor histidine kinase 0.12 AMB_RS02850 branched-chain amino acid aminotransferase — —

Not shown: 10 genomes with orthologs for SO2105 only; 29 genomes with orthologs for SO2615 only