Conservation of cofitness between b3616 and b2948 in Escherichia coli BW25113

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3616 tdh L-threonine 3-dehydrogenase (NCBI) 1.0 b2948 yqgE orf, hypothetical protein (VIMSS) 0.41 5
Escherichia coli ECOR27 1.00 NOLOHH_07595 tdh L-threonine 3-dehydrogenase 1.00 NOLOHH_11140 yqgE YqgE/AlgH family protein low > 57
Escherichia coli BL21 1.00 ECD_03474 L-threonine 3-dehydrogenase, NAD(P)-binding 1.00 ECD_02778 uncharacterized protein low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00083 L-threonine 3-dehydrogenase 1.00 OHPLBJKB_00770 hypothetical protein low > 73
Escherichia coli ECOR38 1.00 HEPCGN_14555 tdh L-threonine 3-dehydrogenase 1.00 HEPCGN_18575 yqgE YqgE/AlgH family protein low > 85
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20635 L-threonine 3-dehydrogenase 1.00 ECOLIN_RS16400 YqgE/AlgH family protein low > 52
Escherichia fergusonii Becca 1.00 EFB2_00194 L-threonine 3-dehydrogenase 1.00 EFB2_00954 hypothetical protein low > 86
Escherichia coli ECRC62 0.99 BNILDI_03920 tdh L-threonine 3-dehydrogenase 1.00 BNILDI_09720 yqgE YqgE/AlgH family protein — —
Escherichia coli ECRC99 0.99 KEDOAH_12435 tdh L-threonine 3-dehydrogenase 1.00 KEDOAH_08870 algH YqgE/AlgH family protein — —
Escherichia coli ECRC101 0.99 MCAODC_06225 tdh L-threonine 3-dehydrogenase 1.00 MCAODC_09790 yqgE YqgE/AlgH family protein — —
Escherichia coli ECRC98 0.99 JDDGAC_19340 tdh L-threonine 3-dehydrogenase 1.00 JDDGAC_22900 yqgE YqgE/AlgH family protein — —
Escherichia coli ECRC102 0.99 NIAGMN_13475 tdh L-threonine 3-dehydrogenase 1.00 NIAGMN_17035 yqgE YqgE/AlgH family protein — —
Escherichia coli ECRC101 0.99 OKFHMN_15715 tdh L-threonine 3-dehydrogenase 1.00 OKFHMN_19270 yqgE YqgE/AlgH family protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.98 GFF394 L-threonine 3-dehydrogenase (EC 1.1.1.103) 0.94 GFF3050 UPF0301 protein YqgE low > 78
Klebsiella michiganensis M5al 0.98 BWI76_RS27250 L-threonine 3-dehydrogenase 0.90 BWI76_RS24080 DUF179 domain-containing protein low > 92
Enterobacter asburiae PDN3 0.97 EX28DRAFT_3869 L-threonine 3-dehydrogenase (EC 1.1.1.103) 0.87 EX28DRAFT_2986 Putative transcriptional regulator low > 76
Enterobacter sp. TBS_079 0.97 MPMX20_00116 L-threonine 3-dehydrogenase 0.88 MPMX20_03806 hypothetical protein low > 85
Serratia liquefaciens MT49 0.95 IAI46_24725 L-threonine 3-dehydrogenase 0.72 IAI46_21395 YqgE/AlgH family protein low > 86
Rahnella sp. WP5 0.91 EX31_RS14385 L-threonine 3-dehydrogenase 0.73 EX31_RS02670 YqgE/AlgH family protein low > 89
Pantoea sp. MT58 0.90 IAI47_00700 L-threonine 3-dehydrogenase 0.76 IAI47_03610 YqgE/AlgH family protein low > 76
Shewanella amazonensis SB2B 0.90 Sama_0097 tdh L-threonine 3-dehydrogenase (RefSeq) 0.49 Sama_2472 putative transcriptional regulator (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.90 CSW01_18565 L-threonine 3-dehydrogenase 0.52 CSW01_02485 YqgE/AlgH family protein low > 62
Shewanella oneidensis MR-1 0.89 SO4673 tdh threonine 3-dehydrogenase (NCBI ptt file) 0.50 SO3346 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.89 Shewana3_4105 tdh L-threonine 3-dehydrogenase (RefSeq) 0.51 Shewana3_1200 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.89 Shew_3710 tdh L-threonine 3-dehydrogenase (RefSeq) 0.48 Shew_1144 hypothetical protein (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.89 HER17_RS20760 L-threonine 3-dehydrogenase 0.72 HER17_RS02630 YqgE/AlgH family protein low > 75
Alteromonas macleodii MIT1002 0.87 MIT1002_00064 L-threonine 3-dehydrogenase 0.48 MIT1002_03056 hypothetical protein low > 70
Dickeya dadantii 3937 0.86 DDA3937_RS20430 L-threonine 3-dehydrogenase 0.74 DDA3937_RS18565 YqgE/AlgH family protein low > 74
Cupriavidus basilensis FW507-4G11 0.81 RR42_RS22860 l-threonine 3-dehydrogenase 0.43 RR42_RS15875 hypothetical protein low > 128
Paraburkholderia sabiae LMG 24235 0.81 QEN71_RS16540 L-threonine 3-dehydrogenase 0.40 QEN71_RS25795 YqgE/AlgH family protein low > 153
Burkholderia phytofirmans PsJN 0.80 BPHYT_RS34650 l-threonine 3-dehydrogenase 0.40 BPHYT_RS04220 hypothetical protein low > 109
Castellaniella sp019104865 MT123 0.79 ABCV34_RS14100 L-threonine 3-dehydrogenase 0.38 ABCV34_RS10730 YqgE/AlgH family protein low > 48
Paraburkholderia bryophila 376MFSha3.1 0.79 H281DRAFT_03586 L-threonine 3-dehydrogenase 0.40 H281DRAFT_04814 putative transcriptional regulator low > 103
Kangiella aquimarina DSM 16071 0.79 B158DRAFT_0285 L-threonine 3-dehydrogenase (EC 1.1.1.103) 0.47 B158DRAFT_0191 Putative transcriptional regulator low > 40
Paraburkholderia graminis OAS925 0.78 ABIE53_004673 threonine 3-dehydrogenase 0.40 ABIE53_001128 putative transcriptional regulator low > 113
Rhizobium sp. OAE497 0.73 ABIE40_RS12725 L-threonine 3-dehydrogenase 0.34 ABIE40_RS04185 YqgE/AlgH family protein low > 107
Sinorhizobium meliloti 1021 0.73 SMc01564 L-threonine 3-dehydrogenase 0.33 SMc00019 hypothetical protein low > 103
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_06605 tdh L-threonine 3-dehydrogenase 0.45 OKGIIK_11085 algH YqgE/AlgH family protein low > 52
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS00650 L-threonine 3-dehydrogenase 0.45 LRK54_RS04210 YqgE/AlgH family protein low > 59
Rhodanobacter denitrificans MT42 0.68 LRK55_RS00420 L-threonine 3-dehydrogenase 0.45 LRK55_RS03980 YqgE/AlgH family protein — —
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS08385 L-threonine 3-dehydrogenase 0.46 ABZR86_RS10380 YqgE/AlgH family protein — —
Lysobacter sp. OAE881 0.67 ABIE51_RS06140 L-threonine 3-dehydrogenase 0.42 ABIE51_RS16025 YqgE/AlgH family protein low > 62
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.4082.1 L-threonine 3-dehydrogenase (EC 1.1.1.103) 0.45 Xcc-8004.1720.1 UPF0301 protein YqgE low > 74
Phaeobacter inhibens DSM 17395 0.60 PGA1_c34320 L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data) 0.42 PGA1_c03130 Putative transcriptional regulator low > 62
Sphingomonas koreensis DSMZ 15582 0.59 Ga0059261_2605 Threonine dehydrogenase and related Zn-dependent dehydrogenases 0.32 Ga0059261_4015 Putative transcriptional regulator low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.57 A4249_RS02510 L-threonine 3-dehydrogenase 0.32 A4249_RS00260 YqgE/AlgH family protein low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF1899 L-threonine 3-dehydrogenase (EC 1.1.1.103) 0.44 GFF648 UPF0301 protein YqgE low > 90
Pseudomonas simiae WCS417 0.21 PS417_15850 alcohol dehydrogenase 0.40 PS417_26685 hypothetical protein low > 88
Rhodopseudomonas palustris CGA009 0.17 TX73_000550 zinc-binding dehydrogenase 0.35 TX73_004710 YqgE/AlgH family protein low > 86

Not shown: 0 genomes with orthologs for b3616 only; 47 genomes with orthologs for b2948 only