Conservation of cofitness between b1096 and b2318 in Escherichia coli BW25113

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b1096 pabC 4-amino-4-deoxychorismate lyase (NCBI) 1.0 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.30 8
Escherichia fergusonii Becca 0.99 EFB2_02879 Aminodeoxychorismate lyase 0.99 EFB2_01540 tRNA pseudouridine synthase A low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS06330 aminodeoxychorismate lyase 0.99 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC62 0.99 BNILDI_19250 pabC aminodeoxychorismate lyase 0.99 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECOR27 0.99 NOLOHH_21090 pabC aminodeoxychorismate lyase 1.00 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_02570 Aminodeoxychorismate lyase 1.00 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli BL21 0.98 ECD_01092 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex 1.00 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia coli ECOR38 0.98 HEPCGN_23920 pabC aminodeoxychorismate lyase 0.99 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 85
Escherichia coli ECRC101 0.98 MCAODC_22920 pabC aminodeoxychorismate lyase 0.99 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC102 0.98 NIAGMN_24270 pabC aminodeoxychorismate lyase 0.99 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC99 0.98 KEDOAH_24195 pabC aminodeoxychorismate lyase 0.99 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.98 OKFHMN_03560 pabC aminodeoxychorismate lyase 0.99 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC98 0.98 JDDGAC_07220 pabC aminodeoxychorismate lyase 0.99 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF3378 Aminodeoxychorismate lyase (EC 4.1.3.38) 0.97 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1833 aminodeoxychorismate lyase 0.93 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Klebsiella michiganensis M5al 0.63 BWI76_RS11105 aminodeoxychorismate lyase 0.92 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Enterobacter sp. TBS_079 0.62 MPMX20_01776 Aminodeoxychorismate lyase 0.93 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Pantoea sp. MT58 0.55 IAI47_12055 aminodeoxychorismate lyase 0.81 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Serratia liquefaciens MT49 0.54 IAI46_09805 aminodeoxychorismate lyase 0.80 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Erwinia tracheiphila SCR3 0.51 LU632_RS14805 pabC aminodeoxychorismate lyase 0.81 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Rahnella sp. WP5 0.51 EX31_RS24450 aminodeoxychorismate lyase 0.73 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Pectobacterium carotovorum WPP14 0.51 HER17_RS08665 aminodeoxychorismate lyase 0.81 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Dickeya dadantii 3937 0.50 DDA3937_RS23255 aminodeoxychorismate lyase 0.79 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Dickeya dianthicola 67-19 0.50 HGI48_RS13170 aminodeoxychorismate lyase 0.79 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Dickeya dianthicola ME23 0.50 DZA65_RS13640 aminodeoxychorismate lyase 0.79 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_10080 4-amino-4-deoxychorismate lyase 0.72 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Shewanella loihica PV-4 0.31 Shew_1577 aminotransferase, class IV (RefSeq) 0.69 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_20180 4-amino-4-deoxychorismate lyase 0.53 AO356_21435 pseudouridine synthase 0.28 13
Pseudomonas sp. RS175 0.29 PFR28_03007 Aminodeoxychorismate lyase 0.53 PFR28_02817 tRNA pseudouridine synthase A 0.28 34
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_5955 Aminodeoxychorismate lyase (EC 4.1.3.38) 0.53 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Shewanella sp. ANA-3 0.28 Shewana3_1764 aminodeoxychorismate lyase apoprotein (RefSeq) 0.70 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) — —
Pseudomonas stutzeri RCH2 0.28 Psest_1691 aminodeoxychorismate lyase 0.52 Psest_2585 pseudouridylate synthase I low > 67
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS23040 aminodeoxychorismate lyase 0.54 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25 0.27 PFLU_RS23040 aminodeoxychorismate lyase 0.54 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Alteromonas macleodii MIT1002 0.27 MIT1002_01736 Aminodeoxychorismate lyase 0.65 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_2108 Aminodeoxychorismate lyase (EC 4.1.3.38) 0.54 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Acinetobacter radioresistens SK82 0.26 MPMX26_02165 Aminodeoxychorismate lyase 0.48 MPMX26_00352 tRNA pseudouridine synthase A low > 36
Shewanella amazonensis SB2B 0.26 Sama_2045 aminodeoxychorismate lyase (RefSeq) 0.69 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Pseudomonas sp. S08-1 0.26 OH686_22155 aminodeoxychorismate lyase 0.56 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_01350 4-amino-4-deoxychorismate lyase 0.53 AO353_20660 pseudouridine synthase low > 101
Pseudomonas simiae WCS417 0.26 PS417_21425 4-amino-4-deoxychorismate lyase 0.54 PS417_18565 pseudouridine synthase — —
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_1650 aminodeoxychorismate lyase apoprotein 0.53 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_448 Aminodeoxychorismate lyase (EC 4.1.3.38) 0.54 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_1650 aminodeoxychorismate lyase apoprotein 0.53 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas putida KT2440 0.25 PP_1917 4-amino-4-deoxychorismate lyase 0.56 PP_1994 tRNA pseudouridine (38-40)synthase low > 96
Lysobacter sp. OAE881 0.23 ABIE51_RS13925 aminodeoxychorismate lyase 0.46 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_1750 aminodeoxychorismate lyase 0.57 B158DRAFT_1483 pseudouridylate synthase I low > 40
Rhodanobacter denitrificans FW104-10B01 0.23 LRK54_RS01165 aminodeoxychorismate lyase 0.43 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Dyella japonica UNC79MFTsu3.2 0.22 ABZR86_RS06150 aminodeoxychorismate lyase 0.42 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Rhodanobacter denitrificans MT42 0.21 LRK55_RS00940 aminodeoxychorismate lyase 0.43 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Rhodanobacter sp. FW510-T8 0.21 OKGIIK_05735 pabC aminodeoxychorismate lyase 0.41 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Marinobacter adhaerens HP15 0.20 HP15_2209 4-amino-4-deoxychorismate lyase 0.52 HP15_1829 tRNA pseudouridine synthase A low > 73
Caulobacter crescentus NA1000 Δfur 0.16 CCNA_03047 4-amino-4-deoxychorismate lyase 0.29 CCNA_00280 tRNA pseudouridine synthase A low > 67
Caulobacter crescentus NA1000 0.16 CCNA_03047 4-amino-4-deoxychorismate lyase 0.29 CCNA_00280 tRNA pseudouridine synthase A low > 66
Pontibacter actiniarum KMM 6156, DSM 19842 0.16 CA264_05490 hypothetical protein 0.27 CA264_17725 tRNA pseudouridine synthase A low > 74
Synechococcus elongatus PCC 7942 0.16 Synpcc7942_1335 probable branched-chain amino acid aminotransferase 0.29 Synpcc7942_2207 truA tRNA pseudouridine synthase A — —
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS14410 4-amino-4-deoxychorismate lyase 0.25 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS03990 aminotransferase class IV 0.20 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA low > 71
Fusobacterium nucleatum SB010 0.15 HUW76_10200 aminotransferase class IV 0.23 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA low > 35
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_2832 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 0.24 Echvi_1728 pseudouridylate synthase I low > 79

Not shown: 1 genomes with orthologs for b1096 only; 43 genomes with orthologs for b2318 only