Conservation of cofitness between b3416 and b1863 in Escherichia coli BW25113

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3416 malQ 4-alpha-glucanotransferase (amylomaltase) (NCBI) 1.0 b1863 ruvC Holliday junction resolvase (NCBI) 0.24 19
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00287 4-alpha-glucanotransferase 1.00 OHPLBJKB_01865 Crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC62 1.00 BNILDI_02750 malQ 4-alpha-glucanotransferase 1.00 BNILDI_15500 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECOR27 1.00 NOLOHH_08765 malQ 4-alpha-glucanotransferase 1.00 NOLOHH_16710 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECOR38 1.00 HEPCGN_15790 malQ 4-alpha-glucanotransferase 1.00 HEPCGN_04675 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli BL21 0.99 ECD_03268 4-alpha-glucanotransferase (amylomaltase) 1.00 ECD_01834 component of RuvABC resolvasome, endonuclease — —
Escherichia coli ECRC99 0.99 KEDOAH_11160 malQ 4-alpha-glucanotransferase 1.00 KEDOAH_01840 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia fergusonii Becca 0.99 EFB2_00412 4-alpha-glucanotransferase 1.00 EFB2_02079 Crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC98 0.99 JDDGAC_20610 malQ 4-alpha-glucanotransferase 1.00 JDDGAC_00840 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC101 0.99 OKFHMN_16980 malQ 4-alpha-glucanotransferase 1.00 OKFHMN_26265 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC101 0.99 MCAODC_07510 malQ 4-alpha-glucanotransferase 1.00 MCAODC_19140 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli ECRC102 0.99 NIAGMN_14750 malQ 4-alpha-glucanotransferase 1.00 NIAGMN_01795 ruvC crossover junction endodeoxyribonuclease RuvC — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS19510 4-alpha-glucanotransferase 1.00 ECOLIN_RS10375 crossover junction endodeoxyribonuclease RuvC — —
Enterobacter asburiae PDN3 0.88 EX28DRAFT_4126 4-alpha-glucanotransferase 0.92 EX28DRAFT_0694 Holliday junction endonuclease RuvC (EC 3.1.22.4) — —
Enterobacter sp. TBS_079 0.88 MPMX20_04303 4-alpha-glucanotransferase 0.91 MPMX20_02768 Crossover junction endodeoxyribonuclease RuvC low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF601 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) 0.92 GFF1644 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Klebsiella michiganensis M5al 0.83 BWI76_RS26160 4-alpha-glucanotransferase (EC 2.4.1.25) (from data) 0.91 BWI76_RS18155 crossover junction endodeoxyribonuclease RuvC — —
Rahnella sp. WP5 0.68 EX31_RS08310 4-alpha-glucanotransferase 0.82 EX31_RS11680 crossover junction endodeoxyribonuclease RuvC — —
Serratia liquefaciens MT49 0.66 IAI46_23840 4-alpha-glucanotransferase 0.81 IAI46_14630 crossover junction endodeoxyribonuclease RuvC — —
Pantoea sp. MT58 0.61 IAI47_20495 4-alpha-glucanotransferase 0.83 IAI47_08440 crossover junction endodeoxyribonuclease RuvC low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS01540 4-alpha-glucanotransferase 0.73 HER17_RS11850 crossover junction endodeoxyribonuclease RuvC low > 75
Dickeya dadantii 3937 0.55 DDA3937_RS19660 4-alpha-glucanotransferase 0.81 DDA3937_RS10070 crossover junction endodeoxyribonuclease RuvC — —
Dickeya dianthicola 67-19 0.54 HGI48_RS19790 4-alpha-glucanotransferase 0.82 HGI48_RS10100 crossover junction endodeoxyribonuclease RuvC — —
Dickeya dianthicola ME23 0.54 DZA65_RS20880 4-alpha-glucanotransferase 0.82 DZA65_RS10515 crossover junction endodeoxyribonuclease RuvC — —
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_14120 4-alpha-glucanotransferase 0.71 CSW01_09250 crossover junction endodeoxyribonuclease RuvC low > 62
Alteromonas macleodii MIT1002 0.43 MIT1002_02400 4-alpha-glucanotransferase 0.56 MIT1002_01331 Crossover junction endodeoxyribonuclease RuvC — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS15420 4-alpha-glucanotransferase 0.32 AMB_RS16260 crossover junction endodeoxyribonuclease RuvC — —
Rhodospirillum rubrum S1H 0.25 Rru_A1607 4-alpha-glucanotransferase (NCBI) 0.29 Rru_A1087 Crossover junction endodeoxyribonuclease RuvC (NCBI) — —
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS33795 4-alpha-glucanotransferase 0.45 BPHYT_RS16605 crossover junction endodeoxyribonuclease RuvC — —
Paraburkholderia graminis OAS925 0.24 ABIE53_004823 4-alpha-glucanotransferase 0.45 ABIE53_003493 crossover junction endodeoxyribonuclease RuvC — —
Paraburkholderia sabiae LMG 24235 0.24 QEN71_RS17715 4-alpha-glucanotransferase 0.44 QEN71_RS26785 crossover junction endodeoxyribonuclease RuvC — —
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_06053 4-alpha-glucanotransferase 0.45 H281DRAFT_04253 Holliday junction endonuclease RuvC — —
Pseudomonas simiae WCS417 0.23 PS417_14490 4-alpha-glucanotransferase 0.53 PS417_22455 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas fluorescens SBW25 0.23 PFLU_RS16420 4-alpha-glucanotransferase 0.53 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC low > 109
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS16420 4-alpha-glucanotransferase 0.53 PFLU_RS24095 crossover junction endodeoxyribonuclease RuvC low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_2994 Glycoside hydrolase, family 77 0.53 Psyr_1408 Holliday junction endonuclease RuvC low > 86
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_2994 Glycoside hydrolase, family 77 0.53 Psyr_1408 Holliday junction endonuclease RuvC low > 86
Pseudomonas sp. S08-1 0.23 OH686_01290 4-alpha-glucanotransferase 0.53 OH686_19125 crossover junction endodeoxyribonuclease RuvC low > 80
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_23765 4-alpha-glucanotransferase 0.54 AO353_03590 crossover junction endodeoxyribonuclease RuvC low > 101
Pseudomonas fluorescens FW300-N2E2 0.23 Pf6N2E2_1076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) 0.54 Pf6N2E2_5535 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Pseudomonas sp. RS175 0.23 PFR28_02147 4-alpha-glucanotransferase 0.54 PFR28_03414 Crossover junction endodeoxyribonuclease RuvC low > 88
Pseudomonas fluorescens FW300-N2C3 0.22 AO356_26015 4-alpha-glucanotransferase 0.54 AO356_18015 crossover junction endodeoxyribonuclease RuvC — —
Rhodopseudomonas palustris CGA009 0.22 TX73_018870 4-alpha-glucanotransferase 0.29 TX73_005650 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas stutzeri RCH2 0.22 Psest_2170 4-alpha-glucanotransferase 0.54 Psest_1495 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_3247 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) 0.54 PfGW456L13_1851 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) low > 87
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS17200 4-alpha-glucanotransferase 0.47 ABZR87_RS07635 crossover junction endodeoxyribonuclease RuvC low > 80
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_4685 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) 0.54 Pf1N1B4_639 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —
Mycobacterium tuberculosis H37Rv 0.20 Rv1781c Probable 4-alpha-glucanotransferase MalQ (amylomaltase) (disproportionating enzyme) (D-enzyme) 0.21 Rv2594c Probable crossover junction endodeoxyribonuclease RuvC (holliday junction nuclease) (holliday junction resolvase) — —
Ralstonia solanacearum PSI07 0.20 RPSI07_RS00870 4-alpha-glucanotransferase 0.46 RPSI07_RS21535 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS22320 4-alpha-glucanotransferase 0.46 RALBFv3_RS11680 crossover junction endodeoxyribonuclease RuvC — —
Ralstonia solanacearum UW163 0.20 UW163_RS22865 4-alpha-glucanotransferase 0.46 UW163_RS01905 crossover junction endodeoxyribonuclease RuvC — —
Pseudomonas putida KT2440 0.20 PP_4052 4-alpha-glucanotransferase 0.48 PP_1215 Crossover junction endodeoxyribonuclease RuvC low > 96
Ralstonia solanacearum GMI1000 0.20 RS_RS18290 4-alpha-glucanotransferase 0.46 RS_RS02500 crossover junction endodeoxyribonuclease RuvC — —
Herbaspirillum seropedicae SmR1 0.19 HSERO_RS12495 4-alpha-glucanotransferase 0.44 HSERO_RS02080 Holliday junction resolvase — —
Xanthomonas campestris pv. campestris strain 8004 0.16 Xcc-8004.541.1 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) 0.37 Xcc-8004.1435.1 Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) — —

Not shown: 2 genomes with orthologs for b3416 only; 35 genomes with orthologs for b1863 only