| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A1436 | | Histidine Kinase (NCBI) | 1.0 | Rru_A3676 | | TRAP dicarboxylate transporter, DctM subunit (NCBI) | 0.76 | 5 |
| Sinorhizobium meliloti 1021 | 0.38 | SM_b20612 | | C4-dicarboxylate transport sensor protein | 0.33 | SM_b21436 | | C4-dicarboxylate transport system, permease large protein transmembrane | low | > 103 |
| Rhizobium sp. OAE497 | 0.36 | ABIE40_RS26340 | | ATP-binding protein | 0.30 | ABIE40_RS25810 | | TRAP transporter large permease | low | > 107 |
| Dechlorosoma suillum PS | 0.30 | Dsui_3485 | | signal transduction histidine kinase regulating C4-dicarboxylate transport system | 0.81 | Dsui_3153 | | TRAP transporter, DctM subunit | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.28 | ABCV34_RS02720 | | ATP-binding protein | 0.52 | ABCV34_RS05060 | | TRAP transporter large permease | low | > 48 |
| Paraburkholderia sabiae LMG 24235 | 0.28 | QEN71_RS01370 | | ATP-binding protein | 0.23 | QEN71_RS36140 | | TRAP transporter large permease | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.27 | ABZR87_RS06630 | | sensor histidine kinase | 0.27 | ABZR87_RS21100 | | TRAP transporter large permease | low | > 80 |
| Azospirillum brasilense Sp245 | 0.26 | AZOBR_RS21135 | | histidine kinase | 0.84 | AZOBR_RS09595 | | C4-dicarboxylate ABC transporter permease | low | > 97 |
| Vibrio cholerae E7946 ATCC 55056 | 0.26 | CSW01_09630 | | sensor histidine kinase | 0.48 | CSW01_09640 | | C4-dicarboxylate ABC transporter permease | low | > 62 |
| Paraburkholderia graminis OAS925 | 0.26 | ABIE53_000647 | | two-component system C4-dicarboxylate transport sensor histidine kinase DctB | 0.27 | ABIE53_006500 | | tripartite ATP-independent transporter DctM subunit | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.26 | H281DRAFT_02038 | | two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB | 0.27 | H281DRAFT_05326 | | TRAP transporter, DctM subunit | low | > 103 |
| Shewanella sp. ANA-3 | 0.26 | Shewana3_1413 | | ATPase domain-containing protein (RefSeq) | 0.47 | Shewana3_1414 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | 0.93 | 3 |
| Burkholderia phytofirmans PsJN | 0.26 | BPHYT_RS02515 | | ATPase | 0.27 | BPHYT_RS24185 | | C4-dicarboxylate ABC transporter permease | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.25 | RR42_RS01700 | | ATPase | 0.34 | RR42_RS34990 | | ABC transporter permease | low | > 128 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.25 | Psyr_3912 | | ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | 0.33 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.25 | Psyr_3912 | | ATP-binding region, ATPase-like:Histidine kinase A, N-terminal | 0.33 | Psyr_0898 | | TRAP dicarboxylate transporter, DctM subunit | low | > 86 |
| Azospirillum sp. SherDot2 | 0.25 | MPMX19_04252 | | C4-dicarboxylate transport sensor protein DctB | 0.76 | MPMX19_00661 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 112 |
| Pseudomonas fluorescens FW300-N2E2 | 0.25 | Pf6N2E2_5566 | | Signal transduction histidine kinase regulating C4-dicarboxylate transport system (EC 2.7.13.3) | 0.33 | Pf6N2E2_485 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 103 |
| Pseudomonas simiae WCS417 | 0.24 | PS417_05540 | | histidine kinase | 0.49 | PS417_14900 | | C4-dicarboxylate ABC transporter permease | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.24 | PFLU_RS05625 | | sensor histidine kinase | 0.49 | PFLU_RS16920 | | TRAP transporter large permease | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.24 | PFLU_RS05625 | | sensor histidine kinase | 0.49 | PFLU_RS16920 | | TRAP transporter large permease | low | > 109 |
| Herbaspirillum seropedicae SmR1 | 0.24 | HSERO_RS16815 | | C4-dicarboxylate ABC transporter | 0.80 | HSERO_RS04250 | | C4-dicarboxylate ABC transporter permease | low | > 78 |
| Pseudomonas sp. RS175 | 0.24 | PFR28_03461 | | C4-dicarboxylate transport sensor protein DctB | 0.54 | PFR28_00121 | | C4-dicarboxylate TRAP transporter large permease protein DctM | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.24 | AO356_18210 | | histidine kinase | 0.34 | AO356_23045 | | hypothetical protein | low | > 104 |
| Magnetospirillum magneticum AMB-1 | 0.24 | AMB_RS08385 | | sensor histidine kinase | 0.87 | AMB_RS04550 | | C4-dicarboxylate ABC transporter permease | low | > 64 |
| Shewanella amazonensis SB2B | 0.24 | Sama_2212 | | putative two-component sensor histidine kinase protein (RefSeq) | 0.44 | Sama_2211 | | alpha-ketoglutarate TRAP transporter, large permease component (from data) | 0.94 | 1 |
| Pseudomonas stutzeri RCH2 | 0.23 | Psest_4131 | | alpha-ketoglutarate sensor protein (mifS) (from data) | 0.55 | Psest_4270 | | TRAP transporter, DctM subunit | low | > 67 |
| Pseudomonas putida KT2440 | 0.23 | PP_1067 | | Sensor histidine kinase | 0.33 | PP_1167 | | D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) | low | > 96 |
| Marinobacter adhaerens HP15 | 0.23 | HP15_724 | | periplasmic sensor signal transduction histidine kinase | 0.27 | HP15_4074 | | C4-dicarboxylate transport system (permease large protein) | low | > 73 |
| Dinoroseobacter shibae DFL-12 | 0.23 | Dshi_1197 | | integral membrane sensor signal transduction histidine kinase (RefSeq) | 0.31 | Dshi_1832 | | TRAP dicarboxylate transporter, DctM subunit (RefSeq) | low | > 64 |
| Shewanella loihica PV-4 | 0.22 | Shew_1443 | | integral membrane sensor signal transduction histidine kinase (RefSeq) | 0.44 | Shew_1444 | | dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) | 0.92 | 3 |
| Escherichia coli Nissle 1917 | 0.21 | ECOLIN_RS23465 | | ATP-binding protein | 0.30 | ECOLIN_RS17390 | | TRAP transporter large permease subunit | low | > 55 |
| Escherichia fergusonii Becca | 0.20 | EFB2_04537 | | C4-dicarboxylate transport sensor protein DctB | 0.26 | EFB2_00228 | | Sialic acid TRAP transporter large permease protein SiaM | low | > 86 |
| Variovorax sp. SCN45 | 0.20 | GFF1692 | | Two-component system sensor histidine kinase | 0.36 | GFF6470 | | TRAP-type C4-dicarboxylate transport system, large permease component | low | > 127 |
| Variovorax sp. OAS795 | 0.20 | ABID97_RS26600 | | ATP-binding protein | 0.34 | ABID97_RS19635 | | TRAP transporter large permease | low | > 91 |
| Phaeobacter inhibens DSM 17395 | 0.18 | PGA1_c13430 | | C4-dicarboxylate transport sensor protein DctB | 0.43 | PGA1_c20660 | | TRAP transporter for fumarate, succinate, L-malate, and 2-oxogulatarate, large permease component (from data) | low | > 62 |
Not shown: 10 genomes with orthologs for Rru_A1436 only; 26 genomes with orthologs for Rru_A3676 only