Homologs of MIT1002_00062 from Alteromonas macleodii MIT1002

Bacteriophytochrome cph2
SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Alteromonas macleodii MIT1002 MIT1002_00062 Bacteriophytochrome cph2 insig. 100 100
o Shewanella loihica PV-4 Shew_3227 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 30 99
  Magnetospirillum magneticum AMB-1 AMB_RS11515 DUF3365 domain-containing protein insig. 42 51
  Dechlorosoma suillum PS Dsui_1429 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 38 57
  Magnetospirillum magneticum AMB-1 AMB_RS06165 CBS domain-containing protein insig. 38 57
  Pseudomonas sp. S08-1 OH686_08910 Phytochrome-like protein / Cph2 cofit 38 57
  Herbaspirillum seropedicae SmR1 HSERO_RS23840 hypothetical protein sig. 39 52
  Marinobacter adhaerens HP15 HP15_68 sensory box/FOG: EAL domain/GGDEF domain containing protein insig. 41 52
o Shewanella amazonensis SB2B Sama_0572 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 32 83
  Desulfovibrio vulgaris Hildenborough JW710 DVU2432 sensory box/GGDEF domain/EAL domain protein (TIGR) insig. 40 54
  Dechlorosoma suillum PS Dsui_0894 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 40 52
  Rhodospirillum rubrum S1H Rru_A3137 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) insig. 40 51
  Azospirillum sp. SherDot2 MPMX19_06128 hypothetical protein insig. 39 52
  Pseudomonas sp. S08-1 OH686_16235 Sensory box/GGDEF family protein insig. 37 56
  Dechlorosoma suillum PS Dsui_1531 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 41 52
  Paraburkholderia sabiae LMG 24235 QEN71_RS30355 bifunctional diguanylate cyclase/phosphodiesterase insig. 40 53
  Dechlorosoma suillum PS Dsui_1564 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 40 52
  Pseudomonas fluorescens FW300-N2C3 AO356_15730 diguanylate phosphodiesterase insig. 38 52
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5083 Serine hydroxymethyltransferase (EC 2.1.2.1) sig. 38 52
  Desulfovibrio vulgaris Miyazaki F DvMF_2963 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) insig. 38 52
  Magnetospirillum magneticum AMB-1 AMB_RS23225 GGDEF domain-containing protein insig. 36 57
  Dechlorosoma suillum PS Dsui_1011 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein insig. 40 52
  Shewanella oneidensis MR-1 SO0341 sensory box protein (NCBI ptt file) insig. 39 51
  Pseudomonas syringae pv. syringae B728a Psyr_4265 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 38 52
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4265 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 38 52
  Acidovorax sp. GW101-3H11 Ac3H11_4997 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 39 53
  Cupriavidus basilensis FW507-4G11 RR42_RS22465 membrane protein insig. 39 54
  Dechlorosoma suillum PS Dsui_0262 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 39 52
  Pseudomonas fluorescens FW300-N2E3 AO353_14025 diguanylate phosphodiesterase strong 37 54
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1452 Serine hydroxymethyltransferase (EC 2.1.2.1) insig. 36 59
  Dechlorosoma suillum PS Dsui_2148 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 40 52
  Dechlorosoma suillum PS Dsui_3104 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein strong 40 51
  Pseudomonas aeruginosa PUPa3 DQ20_RS54400 bifunctional diguanylate cyclase/phosphodiesterase cofit 39 52
  Lysobacter sp. OAE881 ABIE51_RS17335 EAL domain-containing protein insig. 37 51
  Methylophilus sp. DMC18 GFF1755 hypothetical protein insig. 40 51
  Synechococcus elongatus PCC 7942 Synpcc7942_1355 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 38 51
  Pseudomonas fluorescens SBW25 PFLU_RS26190 bifunctional diguanylate cyclase/phosphodiesterase cofit 38 52
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26190 bifunctional diguanylate cyclase/phosphodiesterase sig. 38 52
  Pseudomonas orientalis W4I3 QF045_RS26570 EAL domain-containing protein insig. 38 52
  Pseudomonas simiae WCS417 PS417_24275 diguanylate phosphodiesterase strong 38 52
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2779 Serine hydroxymethyltransferase (EC 2.1.2.1) insig. 37 54
  Pseudomonas sp. DMC3 GFF3964 hypothetical protein insig. 36 59
  Pseudomonas putida KT2440 PP_3319 Sensory box protein/GGDEF domain protein insig. 37 55
  Pseudomonas aeruginosa PA14 IKLFDK_00505 cyclic di-GMP receptor MorA insig. 36 58
  Pseudomonas aeruginosa MRSN321 DY961_RS20305 bifunctional diguanylate cyclase/phosphodiesterase insig. 39 52
  Pseudomonas aeruginosa PUPa3 DQ20_RS55890 morA;inference=COORDINATES cyclic di-GMP receptor MorA sig. 36 58
  Pseudomonas aeruginosa MRSN321 DY961_RS23425 morA;inference=COORDINATES cyclic di-GMP receptor MorA insig. 36 58
  Pseudomonas fluorescens SBW25 PFLU_RS16810 EAL domain-containing protein insig. 39 51
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16810 EAL domain-containing protein insig. 39 51
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05007 hypothetical protein cofit 38 52
  Shewanella sp. ANA-3 Shewana3_3829 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) cofit 38 53
  Pseudomonas aeruginosa PA14 IKLFDK_08335 Uncharacterized signaling protein PA1727 sig. 39 52
  Pseudomonas sp. DMC3 GFF2190 putative signaling protein insig. 38 55
  Pseudomonas sp. RS175 PFR28_03785 hypothetical protein insig. 38 52
  Azospirillum sp. SherDot2 MPMX19_00480 hypothetical protein insig. 38 57
  Pseudomonas simiae WCS417 PS417_14800 diguanylate cyclase insig. 38 51
  Synechococcus elongatus PCC 7942 Synpcc7942_1158 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) insig. 39 51
  Pseudomonas sp. SVBP6 COO64_RS03000 EAL domain-containing protein insig. 36 54
  Herbaspirillum seropedicae SmR1 HSERO_RS04200 diguanylate cyclase insig. 39 52
  Pseudomonas sp. RS175 PFR28_04760 hypothetical protein strong 37 57
  Pseudomonas segetis P6 ACVTMO_RS16300 putative bifunctional diguanylate cyclase/phosphodiesterase insig. 39 53
  Variovorax sp. SCN45 GFF1448 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) sig. 38 52
  Dechlorosoma suillum PS Dsui_3161 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein sig. 38 53
  Acidovorax sp. GW101-3H11 Ac3H11_1143 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) sig. 39 52
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3263 Sensory box/GGDEF family protein insig. 38 52
  Pseudomonas segetis P6 ACVTMO_RS19720 EAL domain-containing protein strong 36 56
  Dechlorosoma suillum PS Dsui_2394 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein insig. 40 52
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4670 Sensory box/GGDEF family protein insig. 39 52
  Magnetospirillum magneticum AMB-1 AMB_RS23535 PAS domain S-box protein cofit 38 57
  Shewanella amazonensis SB2B Sama_0142 sensory box protein (RefSeq) sig. 39 51
  Pseudomonas orientalis W4I3 QF045_RS17095 EAL domain-containing protein insig. 39 52
  Pseudomonas aeruginosa MRSN321 DY961_RS22900 EAL domain-containing protein insig. 39 52
  Magnetospirillum magneticum AMB-1 AMB_RS18310 bifunctional diguanylate cyclase/phosphodiesterase cofit 39 52
  Pseudomonas sp. BP01 JOY50_RS24630 bifunctional diguanylate cyclase/phosphodiesterase insig. 36 54
  Pseudomonas aeruginosa PUPa3 DQ20_RS36445 EAL domain-containing protein insig. 39 52
  Dechlorosoma suillum PS Dsui_2605 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 40 52
  Herbaspirillum seropedicae SmR1 HSERO_RS16570 membrane protein insig. 39 54
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2238 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 38 52
  Marinobacter adhaerens HP15 HP15_1500 sensory box/GGDEF family protein insig. 37 52
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1729 GGDEF domain protein insig. 36 57
  Pseudomonas sp. S08-1 OH686_14965 Sensory box/GGDEF family protein cofit 38 57
  Pseudomonas putida KT2440 PP_0672 Sensory box protein sig. 36 54
  Pseudomonas aeruginosa PA14 IKLFDK_22535 bifunctional diguanylate cyclase/phosphodiesterase insig. 38 52
  Pseudomonas syringae pv. syringae B728a Psyr_0509 PAS:GGDEF insig. 40 52
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0509 PAS:GGDEF insig. 40 52
  Methylophilus sp. DMC18 GFF1518 hypothetical protein cofit 39 51
  Pseudomonas fluorescens FW300-N2E3 AO353_20610 histidine kinase insig. 38 52
  Azospirillum sp. SherDot2 MPMX19_04641 hypothetical protein insig. 39 52
  Pseudomonas syringae pv. syringae B728a Psyr_2486 diguanylate cyclase/phosphodiesterase insig. 38 52
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2486 diguanylate cyclase/phosphodiesterase insig. 38 52
  Shewanella oneidensis MR-1 SO0427 sensory box protein (NCBI ptt file) sig. 38 52
  Pseudomonas fluorescens FW300-N2C3 AO356_14260 diguanylate cyclase insig. 37 54
  Pseudomonas sp. RS175 PFR28_02826 hypothetical protein strong 37 52
  Pseudomonas sp. BP01 JOY50_RS18490 dibA phosphodiesterase DibA insig. 36 58
  Pseudomonas sp. S08-1 OH686_19830 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 39 55
  Pseudomonas sp. DMC3 GFF4251 hypothetical protein cofit 37 57
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_60 Sensory box/GGDEF family protein insig. 38 52
  Pseudomonas sp. RS175 PFR28_01206 hypothetical protein insig. 38 52
  Pseudomonas fluorescens GW456-L13 PfGW456L13_490 GGDEF domain protein insig. 37 57
  Enterobacter sp. TBS_079 MPMX20_04172 putative signaling protein insig. 38 51