Homologs of GFF96 from Variovorax sp. SCN45

RNA polymerase ECF-type sigma factor
SEED: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF96 RNA polymerase ECF-type sigma factor insig. 100 100
  Variovorax sp. SCN45 GFF794 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 59 71
  Variovorax sp. SCN45 GFF4185 RNA polymerase ECF-type sigma factor insig. 58 80
  Variovorax sp. SCN45 GFF1727 no description insig. 56 69
  Cupriavidus basilensis FW507-4G11 RR42_RS14885 DNA-directed RNA polymerase sigma-70 factor insig. 42 66
  Variovorax sp. SCN45 GFF791 RNA polymerase sigma factor RpoE insig. 41 68
  Variovorax sp. SCN45 GFF1723 Extracytoplasmic function (ECF) sigma factor VreI no data 37 69
  Variovorax sp. SCN45 GFF4182 Extracytoplasmic function (ECF) sigma factor VreI insig. 40 68
  Variovorax sp. SCN45 GFF6854 RNA polymerase ECF-type sigma factor insig. 37 69
  Rhodopseudomonas palustris CGA009 TX73_006850 RNA polymerase sigma factor insig. 37 71
  Variovorax sp. SCN45 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 36 69
  Rhodopseudomonas palustris CGA009 TX73_006920 RNA polymerase sigma factor insig. 34 70
  Pseudomonas simiae WCS417 PS417_11245 RNA polymerase subunit sigma-24 insig. 33 66
  Variovorax sp. SCN45 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 35 69
  Pseudomonas fluorescens SBW25 PFLU_RS11840 RNA polymerase sigma factor insig. 32 66
  Pseudomonas fluorescens SBW25-INTG PFLU_RS11840 RNA polymerase sigma factor sig. 32 66
  Pseudomonas aeruginosa MRSN321 DY961_RS09155 vreI;inference=COORDINATES RNA polymerase sigma factor VreI sig. 34 66
  Pseudomonas aeruginosa PA14 IKLFDK_02765 RNA polymerase sigma factor VreI insig. 34 66
  Pseudomonas aeruginosa PUPa3 DQ20_RS58865 vreI;inference=COORDINATES RNA polymerase sigma factor VreI sig. 34 66
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2986 RNA polymerase sigma factor, sigma-70 family insig. 33 71
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 34 70
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS05075 RNA polymerase sigma factor insig. 35 60
  Rhodopseudomonas palustris CGA009 TX73_006880 sigma-70 family RNA polymerase sigma factor insig. 36 67
  Pseudomonas sp. DMC3 GFF3003 hypothetical protein insig. 34 67
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06665 RNA polymerase sigma factor insig. 33 70
  Ralstonia solanacearum UW163 UW163_RS06960 RNA polymerase sigma factor insig. 33 70
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_641 Extracytoplasmic function (ECF) sigma factor VreI insig. 30 66
  Dechlorosoma suillum PS Dsui_0621 RNA polymerase sigma factor, sigma-70 family insig. 32 70
  Rhodospirillum rubrum S1H Rru_A1438 Sigma-24 (FecI) (NCBI) cofit 33 65
  Xanthobacter sp. DMC5 GFF2135 putative RNA polymerase sigma factor FecI insig. 30 71
  Pseudomonas fluorescens FW300-N2C3 AO356_24740 RNA polymerase subunit sigma-24 insig. 30 66
  Agrobacterium fabrum C58 Atu5309 ECF family RNA polymerase sigma factor no data 34 69
  Ralstonia solanacearum PSI07 RPSI07_RS10560 RNA polymerase sigma factor insig. 32 69
  Pseudomonas sp. RS175 PFR28_01609 hypothetical protein sig. 30 66
  Variovorax sp. SCN45 GFF1645 Sigma factor PvdS, controling pyoverdin biosynthesis insig. 29 66
  Pseudomonas sp. SVBP6 COO64_RS02925 RNA polymerase sigma factor insig. 31 71
  Pseudomonas fluorescens FW300-N2C3 AO356_22495 RNA polymerase subunit sigma-24 insig. 30 62
  Ralstonia solanacearum GMI1000 RS_RS14615 RNA polymerase sigma factor insig. 32 67
  Herbaspirillum seropedicae SmR1 HSERO_RS11705 extracytoplasmic-function sigma-70 factor insig. 30 63
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2727 FIG006045: Sigma factor, ECF subfamily insig. 29 57
  Pseudomonas sp. BP01 JOY50_RS02475 sigma-70 family RNA polymerase sigma factor no data 32 69
  Pseudomonas sp. BP01 JOY50_RS12755 sigma-70 family RNA polymerase sigma factor insig. 30 69
  Pseudomonas sp. SVBP6 COO64_RS03795 RNA polymerase sigma factor insig. 27 64
  Pseudomonas sp. RS175 PFR28_02540 putative RNA polymerase sigma factor FecI insig. 29 62
  Pseudomonas aeruginosa PA14 IKLFDK_06490 RNA polymerase subunit sigma-70 insig. 29 70
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 29 80
  Pseudomonas aeruginosa PUPa3 DQ20_RS53290 RNA polymerase sigma factor insig. 29 70
  Dechlorosoma suillum PS Dsui_1673 RNA polymerase sigma factor, sigma-70 family no data 27 65
  Rhodopseudomonas palustris CGA009 TX73_016965 RNA polymerase sigma factor insig. 35 71
  Pseudomonas aeruginosa MRSN321 DY961_RS19165 RNA polymerase sigma factor insig. 29 70
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_398 FIG006045: Sigma factor, ECF subfamily insig. 31 56
  Pseudomonas sp. BP01 JOY50_RS19220 RNA polymerase sigma factor insig. 26 71
  Sphingobium sp. HT1-2 GFF2715 sigma factor insig. 33 55
  Pectobacterium carotovorum WPP14 HER17_RS14055 sigma-70 family RNA polymerase sigma factor insig. 26 65
  Variovorax sp. SCN45 GFF5284 RNA polymerase ECF-type sigma factor insig. 28 74
  Rhodospirillum rubrum S1H Rru_A2397 Sigma-24 (FecI) (NCBI) insig. 29 57
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 29 69
  Xanthobacter sp. DMC5 GFF2424 putative RNA polymerase sigma factor FecI insig. 32 70
  Sphingobium sp. HT1-2 GFF4091 hypothetical protein insig. 27 65
  Sphingobium sp. HT1-2 GFF5333 sigma factor cofit 29 67
  Castellaniella sp019104865 MT123 ABCV34_RS11175 sigma-70 family RNA polymerase sigma factor insig. 31 69
  Pseudomonas sp. S08-1 OH686_01025 hypothetical protein insig. 31 66
  Rhodospirillum rubrum S1H Rru_A2372 Sigma-24 (FecI) (NCBI) insig. 29 78
  Burkholderia phytofirmans PsJN BPHYT_RS20215 RNA polymerase sigma 70 sig. 28 60
  Pseudomonas sp. BP01 JOY50_RS22705 RNA polymerase sigma factor insig. 30 67
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 26 70
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2900 FIG006045: Sigma factor, ECF subfamily insig. 27 64
  Pseudomonas fluorescens FW300-N2C3 AO356_05230 RNA polymerase subunit sigma-24 insig. 26 65
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00780 RNA polymerase sigma-70 factor insig. 24 80
  Azospirillum brasilense Sp245 AZOBR_RS29160 putative RNA polymerase sigma-70 factor ECF subfamily insig. 31 64
  Pseudomonas aeruginosa MRSN321 DY961_RS15880 RNA polymerase sigma factor sig. 30 70
  Pseudomonas aeruginosa PA14 IKLFDK_17505 RNA polymerase subunit sigma-70 insig. 30 70
  Pseudomonas aeruginosa PUPa3 DQ20_RS41200 RNA polymerase sigma factor insig. 30 70
  Pseudomonas sp. SVBP6 COO64_RS12800 RNA polymerase sigma factor insig. 30 67
  Pseudomonas simiae WCS417 PS417_16255 RNA polymerase sigma factor sig. 28 69
  Pseudomonas sp. BP01 JOY50_RS12920 RNA polymerase sigma factor insig. 32 65
  Pseudomonas putida KT2440 PP_0865 ECF subfamily RNA polymerase sigma-24 factor insig. 30 67
  Variovorax sp. OAS795 ABID97_RS21515 sigma-70 family RNA polymerase sigma factor no data 27 55
  Pseudomonas sp. BP01 JOY50_RS11985 RNA polymerase sigma factor insig. 31 72
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 27 64
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02400 RNA polymerase sigma factor cofit 26 61
  Methylophilus sp. DMC18 GFF230 hypothetical protein insig. 25 69
  Cellulophaga baltica 18 M666_RS00810 sigma-70 family RNA polymerase sigma factor insig. 21 69
  Pseudomonas sp. SVBP6 COO64_RS11395 RNA polymerase sigma factor insig. 29 69
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 26 69
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 32 63
  Pseudomonas putida KT2440 PP_0352 RNA polymerase sigma-70 factor, ECF subfamily sig. 27 73
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS21465 RNA polymerase sigma factor insig. 26 70
  Ralstonia solanacearum UW163 UW163_RS17725 RNA polymerase sigma factor insig. 26 70
  Pseudomonas putida KT2440 PP_2192 putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein insig. 30 69
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 29 62
  Sphingobium sp. HT1-2 GFF2714 FIG006045: Sigma factor, ECF subfamily insig. 28 57
  Ralstonia solanacearum GMI1000 RS_RS19160 RNA polymerase sigma factor sig. 26 69
  Pseudomonas sp. RS175 PFR28_02859 putative RNA polymerase sigma factor FecI insig. 27 67
  Pseudomonas fluorescens SBW25 PFLU_RS26350 RNA polymerase sigma factor insig. 28 71
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26350 RNA polymerase sigma factor sig. 28 71
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3549 RNA polymerase sigma factor, sigma-70 family insig. 25 65
  Pseudomonas simiae WCS417 PS417_22700 RNA polymerase subunit sigma-24 strong 27 65
  Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 32 65
  Pseudomonas syringae pv. syringae B728a Psyr_4731 Sigma-70 region 2:Sigma-70 region 4 insig. 29 62