| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF774 | | putative integrase | insig. | 100 | 100 |
| o | Enterobacter sp. TBS_079 | MPMX20_02933 | | Putative defective protein IntQ | cofit | 69 | 98 |
| | Escherichia coli ECRC100 | OKFHMN_23690 | fimB | site-specific integrase | cofit | 64 | 98 |
| | Escherichia coli ECRC101 | MCAODC_14740 | fimB | site-specific integrase | insig. | 64 | 98 |
| | Escherichia coli ECRC102 | NIAGMN_21455 | fimB | site-specific integrase | insig. | 64 | 98 |
| | Escherichia coli ECRC98 | JDDGAC_27645 | fimB | site-specific integrase | insig. | 64 | 98 |
| | Escherichia coli ECOR38 | HEPCGN_02265 | fimB | site-specific integrase | insig. | 64 | 98 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS10680 | | site-specific integrase | no data | 65 | 98 |
| | Escherichia coli ECRC102 | NIAGMN_23200 | fimB | site-specific integrase | insig. | 65 | 99 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF3696 | | Integrase | insig. | 62 | 98 |
| o | Escherichia coli ECOR27 | NOLOHH_18320 | intQ | Putative defective protein IntQ | insig. | 59 | 98 |
| o | Klebsiella michiganensis M5al | BWI76_RS15885 | | putative phage integrase | insig. | 59 | 97 |
| | Escherichia coli ECOR38 | HEPCGN_06200 | intQ | Putative defective protein IntQ | insig. | 58 | 98 |
| | Escherichia coli ECRC98 | JDDGAC_03115 | | site-specific integrase | insig. | 58 | 98 |
| o | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_21245 | | DUF3596 domain-containing protein | cofit | 51 | 96 |
| | Escherichia coli ECRC99 | KEDOAH_04495 | | tyrosine-type recombinase/integrase | no data | 64 | 66 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1329 | | Site-specific recombinase XerD | insig. | 42 | 97 |
| | Escherichia coli ECRC100 | OKFHMN_02150 | fimB | site-specific integrase | insig. | 44 | 95 |
| | Escherichia coli ECOR27 | NOLOHH_19865 | intR | Prophage integrase IntR | insig. | 43 | 95 |
| | Escherichia coli ECRC102 | NIAGMN_26320 | fimB | site-specific integrase | insig. | 43 | 95 |
| | Escherichia coli BW25113 | b1345 | intR | Rac prophage; integrase (NCBI) | insig. | 43 | 95 |
| | Escherichia coli ECRC98 | JDDGAC_04710 | fimB | site-specific integrase | sig. | 43 | 95 |
| | Escherichia coli BL21 | ECD_01322 | | Rac prophage; integrase | insig. | 43 | 95 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1605 | | Integrase | insig. | 43 | 97 |
| | Escherichia coli ECRC100 | OKFHMN_03080 | | site-specific integrase | no data | 57 | 41 |
| | Escherichia coli ECRC101 | MCAODC_17235 | | site-specific integrase | insig. | 57 | 41 |
| | Escherichia coli ECRC102 | NIAGMN_28415 | | site-specific integrase | no data | 57 | 41 |
| | Escherichia coli ECRC98 | JDDGAC_02775 | | site-specific integrase | no data | 57 | 41 |
| | Escherichia coli ECRC98 | JDDGAC_29590 | | site-specific integrase | no data | 57 | 41 |
| | Escherichia coli ECRC99 | KEDOAH_27775 | | site-specific integrase | no data | 57 | 41 |
| | Erwinia amylovora T8 | OLJFJH_13850 | | site-specific integrase | insig. | 50 | 48 |
| o | Pseudomonas orientalis W4I3 | QF045_RS23265 | | DUF3596 domain-containing protein | cofit | 28 | 97 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_20440 | | integrase | insig. | 28 | 93 |
| o | Pseudomonas sp. S08-1 | OH686_19235 | | hypothetical protein | insig. | 29 | 96 |
| | Shewanella sp. ANA-3 | Shewana3_2356 | | phage integrase family protein (RefSeq) | insig. | 29 | 91 |
| | Marinobacter adhaerens HP15 | HP15_79 | | phage integrase family protein | insig. | 28 | 90 |
| o | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5337 | | Phage integrase | insig. | 29 | 93 |
| o | Dickeya dadantii 3937 | DDA3937_RS03860 | | site-specific integrase | insig. | 28 | 94 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS09060 | | site-specific integrase | insig. | 28 | 94 |
| | Pseudomonas sp. SVBP6 | COO64_RS14765 | | tyrosine-type recombinase/integrase | insig. | 27 | 93 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_26505 | | integrase | insig. | 28 | 96 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS13745 | | site-specific integrase | insig. | 28 | 91 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS13745 | | site-specific integrase | insig. | 28 | 91 |
| | Pseudomonas sp. SVBP6 | COO64_RS06525 | | site-specific integrase | insig. | 28 | 92 |
| | Variovorax sp. OAS795 | ABID97_RS09560 | | tyrosine-type recombinase/integrase | insig. | 25 | 90 |
| | Shewanella sp. ANA-3 | Shewana3_2022 | | phage integrase family protein (RefSeq) | cofit | 26 | 90 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_02051 | | Putative defective protein IntQ | cofit | 32 | 55 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_26060 | | integrase | insig. | 27 | 60 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_21795 | | Putative integrase | insig. | 59 | 12 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_20435 | | integrase | insig. | 31 | 35 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS00045 | | site-specific integrase | insig. | 27 | 54 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3213 | | integrase family protein (RefSeq) | insig. | 26 | 59 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF2647 | | Integrase | no data | 63 | 11 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS11865 | | tyrosine-type recombinase/integrase | insig. | 23 | 81 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3270 | | Site-specific recombinase XerD | insig. | 24 | 76 |
| | Escherichia coli ECRC100 | OKFHMN_09660 | xerD | integrase | insig. | 23 | 85 |
| | Escherichia coli ECRC98 | JDDGAC_13285 | xerD | integrase | insig. | 23 | 85 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_4439 | | Site-specific recombinase XerD | insig. | 21 | 73 |
| | Pseudomonas putida KT2440 | PP_2937 | | putative Integrase | insig. | 30 | 27 |
| | Escherichia coli ECRC101 | MCAODC_00180 | xerD | Site-specific recombinase XerD | insig. | 27 | 57 |
| | Escherichia coli ECRC102 | NIAGMN_07520 | xerD | integrase | insig. | 27 | 57 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_14800 | | hypothetical protein | insig. | 25 | 54 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0827 | | Site-specific recombinase XerD | insig. | 25 | 56 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT4544 | | transposase (NCBI ptt file) | cofit | 21 | 73 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_15045 | | integrase | insig. | 22 | 86 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS03200 | | site-specific integrase | insig. | 22 | 56 |
| | Dickeya dianthicola 67-19 | HGI48_RS05235 | | tyrosine-type recombinase/integrase | insig. | 39 | 16 |
| | Azospirillum sp. SherDot2 | MPMX19_00161 | | Putative prophage phiRv2 integrase | cofit | 25 | 49 |
| | Xanthobacter sp. DMC5 | GFF3621 | | Tyrosine recombinase XerC | insig. | 24 | 59 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1654 | xerD | site-specific recombinase, phage integrase family (TIGR) | sig. | 24 | 71 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1757 | | site-specific recombinase, phage integrase family (TIGR) | insig. | 24 | 57 |
| | Dechlorosoma suillum PS | Dsui_1127 | | site-specific recombinase XerD | cofit | 29 | 38 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c00260 | | putative phage integrase, catalytic core | insig. | 27 | 57 |
| | Pseudomonas simiae WCS417 | PS417_10730 | | hypothetical protein | insig. | 25 | 43 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_24150 | | integrase | insig. | 29 | 28 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04789 | | site-specific recombinase, phage integrase family | insig. | 22 | 62 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03244 | | hypothetical protein | cofit | 41 | 13 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_17510 | | integrase | cofit | 38 | 16 |
| | Erwinia tracheiphila SCR3 | LU632_RS06490 | | site-specific integrase | insig. | 38 | 16 |
| | Escherichia coli ECRC100 | OKFHMN_27810 | | Integrase, cryptic prophage CP-933P | cofit | 82 | 6 |
| | Escherichia coli ECRC101 | MCAODC_17600 | | Integrase, cryptic prophage CP-933P | insig. | 82 | 6 |
| | Escherichia coli ECRC102 | NIAGMN_00265 | | Integrase, cryptic prophage CP-933P | insig. | 82 | 6 |
| | Escherichia coli ECRC98 | JDDGAC_02400 | | Integrase, cryptic prophage CP-933P | no data | 82 | 6 |
| | Escherichia coli ECRC99 | KEDOAH_00295 | | Integrase, cryptic prophage CP-933P | no data | 82 | 6 |
| | Rahnella sp. WP5 | EX31_RS18465 | | tyrosine-type recombinase/integrase | insig. | 28 | 40 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS35970 | | DNA recombinase | insig. | 26 | 68 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS23770 | | hypothetical protein | insig. | 23 | 55 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.847.1 | | Site-specific tyrosine recombinase | no data | 24 | 69 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_03915 | | site-specific recombinase, phage integrase family | insig. | 20 | 75 |
| | Dechlorosoma suillum PS | Dsui_0138 | | site-specific recombinase XerD | cofit | 29 | 30 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS12285 | xerC;go_function=site-specific | tyrosine recombinase XerC | strong | 27 | 27 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_27050 | | tyrosine recombinase XerC | strong | 27 | 27 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS49840 | xerC;go_function=site-specific | tyrosine recombinase XerC | strong | 27 | 27 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_05324 | | site-specific recombinase, phage integrase family | insig. | 27 | 23 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS02095 | | site-specific integrase | insig. | 30 | 32 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04169 | | phage integrase SAM-like domain protein | insig. | 26 | 41 |
| | Pseudomonas sp. S08-1 | OH686_13785 | | tyrosine recombinase XerC | insig. | 26 | 25 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT2446 | | integrase (NCBI ptt file) | insig. | 26 | 22 |
| | Bacteroides thetaiotaomicron VPI-5482 | BT4022 | | integrase (NCBI ptt file) | sig. | 24 | 21 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS01870 | | site-specific integrase | insig. | 24 | 39 |