| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Sphingobium sp. HT1-2 | GFF5154 | | L,D-transpeptidase | insig. | 100 | 100 |
| | Sphingobium sp. HT1-2 | GFF2124 | | L,D-transpeptidase | cofit | 51 | 87 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_0719 | | Uncharacterized protein conserved in bacteria | strong | 49 | 88 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1169.1 | | ErfK/YbiS/YcfS/YnhG family protein | insig. | 44 | 85 |
| | Lysobacter sp. OAE881 | ABIE51_RS10880 | | L,D-transpeptidase | insig. | 42 | 86 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS03880 | | L,D-transpeptidase family protein | insig. | 37 | 92 |
| | Sinorhizobium meliloti 1021 | SMc01575 | | hypothetical protein | strong | 37 | 85 |
| o | Variovorax sp. OAS795 | ABID97_RS27685 | | L,D-transpeptidase family protein | insig. | 36 | 87 |
| | Rhizobium sp. OAE497 | ABIE40_RS12005 | | L,D-transpeptidase | cofit | 36 | 87 |
| | Sinorhizobium meliloti 1021 | SM_b21573 | | hypothetical protein | insig. | 36 | 87 |
| | Rhizobium sp. OAE497 | ABIE40_RS27810 | | L,D-transpeptidase | insig. | 37 | 84 |
| | Agrobacterium fabrum C58 | Atu2133 | | hypothetical protein | strong | 35 | 86 |
| | Acinetobacter radioresistens SK82 | MPMX26_00975 | | hypothetical protein | strong | 33 | 87 |
| | Acinetobacter baumannii LAC-4 | RR41_RS05540 | | L,D-transpeptidase | insig. | 33 | 87 |
| | Bosea sp. OAE506 | ABIE41_RS06555 | | L,D-transpeptidase | insig. | 33 | 89 |
| | Pseudomonas stutzeri RCH2 | Psest_2334 | | Uncharacterized protein conserved in bacteria | strong | 26 | 48 |
| | Synechococcus elongatus PCC 7942 | Synpcc7942_0647 | | hypothetical protein | sig. | 32 | 33 |
| | Pseudomonas sp. RS175 | PFR28_00960 | | hypothetical protein | strong | 24 | 63 |
| | Pseudomonas sp. BP01 | JOY50_RS25815 | | L,D-transpeptidase family protein | insig. | 37 | 21 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS13015 | | L,D-transpeptidase | sig. | 28 | 33 |
| | Rhodopseudomonas palustris CGA009 | TX73_021875 | | L,D-transpeptidase | insig. | 47 | 15 |
| | Pseudomonas putida KT2440 | PP_2320 | | conserved exported protein of unknown function | strong | 38 | 19 |
| | Marinobacter adhaerens HP15 | HP15_3824 | | ErfK/YbiS/YcfS/YnhG family protein | strong | 38 | 18 |
| | Pseudomonas sp. SVBP6 | COO64_RS09790 | | L,D-transpeptidase family protein | insig. | 36 | 21 |
| | Bosea sp. OAE506 | ABIE41_RS21100 | | L,D-transpeptidase | insig. | 39 | 17 |
| | Azospirillum sp. SherDot2 | MPMX19_04296 | | hypothetical protein | insig. | 30 | 32 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2070 | | ErfK/YbiS/YcfS/YnhG | strong | 23 | 63 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2070 | | ErfK/YbiS/YcfS/YnhG | insig. | 23 | 63 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2221 | | ErfK/YbiS/YcfS/YnhG family protein | strong | 23 | 63 |
| | Bosea sp. OAE506 | ABIE41_RS22060 | | L,D-transpeptidase | insig. | 41 | 16 |
| | Pseudomonas sp. S08-1 | OH686_01780 | | L,D-transpeptidase | strong | 37 | 21 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_14500 | | YkuD domain-containing protein | cofit | 34 | 21 |
| | Pseudomonas sp. DMC3 | GFF4626 | | putative L,D-transpeptidase YbiS | cofit | 23 | 63 |
| | Rhodopseudomonas palustris CGA009 | TX73_018480 | | L,D-transpeptidase | insig. | 46 | 15 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_292 | | ErfK/YbiS/YcfS/YnhG family protein | strong | 34 | 21 |
| | Agrobacterium fabrum C58 | Atu0669 | | hypothetical protein | insig. | 39 | 18 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_19015 | | hypothetical protein | strong | 37 | 20 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_03215 | | hypothetical protein | strong | 34 | 21 |
| | Sinorhizobium meliloti 1021 | SMc00924 | | hypothetical protein | insig. | 39 | 18 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c17320 | | Uncharacterized protein conserved in bacteria | strong | 38 | 17 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2474 | | ErfK/YbiS/YcfS/YnhG family protein | strong | 23 | 63 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3496 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | insig. | 43 | 16 |
| | Rhizobium sp. OAE497 | ABIE40_RS03585 | | L,D-transpeptidase | insig. | 39 | 18 |
| | Bosea sp. OAE506 | ABIE41_RS14200 | | L,D-transpeptidase | insig. | 39 | 17 |
| | Klebsiella michiganensis M5al | BWI76_RS09030 | | transpeptidase | strong | 23 | 63 |
| | Pseudomonas segetis P6 | MPMX49_02652 | | putative L,D-transpeptidase YbiS | strong | 34 | 21 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS08365 | | L,D-transpeptidase family protein | cofit | 23 | 63 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS08365 | | L,D-transpeptidase family protein | strong | 23 | 63 |
| | Pseudomonas simiae WCS417 | PS417_08415 | | hypothetical protein | strong | 23 | 63 |
| | Bosea sp. OAE506 | ABIE41_RS10175 | | L,D-transpeptidase | insig. | 45 | 15 |
| | Escherichia coli BL21 | ECD_00786 | | L,D-transpeptidase linking Lpp to murein | strong | 38 | 19 |
| | Escherichia fergusonii Becca | EFB2_03286 | | putative L,D-transpeptidase YbiS | cofit | 38 | 19 |
| | Escherichia coli ECOR27 | NOLOHH_22515 | ldtB | L,D-transpeptidase | strong | 38 | 19 |
| | Escherichia coli ECOR38 | HEPCGN_01875 | ldtB | L,D-transpeptidase | strong | 38 | 19 |
| | Escherichia coli ECRC100 | OKFHMN_06165 | ldtB | L,D-transpeptidase | cofit | 38 | 19 |
| | Escherichia coli ECRC101 | MCAODC_25380 | ldtB | L,D-transpeptidase | strong | 38 | 19 |
| | Escherichia coli ECRC102 | NIAGMN_04210 | ldtB | L,D-transpeptidase | cofit | 38 | 19 |
| | Escherichia coli ECRC62 | BNILDI_20795 | ldtB | L,D-transpeptidase | strong | 38 | 19 |
| | Escherichia coli ECRC98 | JDDGAC_09800 | ldtB | L,D-transpeptidase | strong | 38 | 19 |
| | Escherichia coli ECRC99 | KEDOAH_21745 | ldtB | L,D-transpeptidase | no data | 38 | 19 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02894 | | putative L,D-transpeptidase YbiS | cofit | 38 | 19 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS04365 | | L,D-transpeptidase | no data | 38 | 19 |
| | Escherichia coli BW25113 | b0819 | ybiS | hypothetical protein (NCBI) | strong | 38 | 19 |
| | Pantoea sp. MT58 | IAI47_13415 | | L,D-transpeptidase family protein | strong | 23 | 58 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01816 | | hypothetical protein | cofit | 23 | 63 |
| | Rhizobium sp. OAE497 | ABIE40_RS26600 | | L,D-transpeptidase | insig. | 39 | 18 |
| | Bosea sp. OAE506 | ABIE41_RS08190 | | L,D-transpeptidase | insig. | 40 | 16 |
| | Xanthobacter sp. DMC5 | GFF4149 | | hypothetical protein | no data | 39 | 17 |
| | Enterobacter sp. TBS_079 | MPMX20_01456 | | putative L,D-transpeptidase YbiS | sig. | 38 | 19 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF716 | | L,D-transpeptidase YbiS | cofit | 23 | 58 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_17285 | | L D-transpeptidase | strong | 23 | 58 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1681 | | Uncharacterized protein conserved in bacteria | insig. | 23 | 59 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3406 | | ErfK/YbiS/YcfS/YnhG family protein (RefSeq) | insig. | 49 | 12 |
| | Rhodopseudomonas palustris CGA009 | TX73_001100 | | L,D-transpeptidase | cofit | 42 | 16 |
| | Rhizobium sp. OAE497 | ABIE40_RS05790 | | L,D-transpeptidase | insig. | 42 | 15 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_2148 | | Uncharacterized protein conserved in bacteria | strong | 38 | 19 |
| | Serratia liquefaciens MT49 | IAI46_02600 | | L,D-transpeptidase family protein | insig. | 24 | 58 |
| | Rhodopseudomonas palustris CGA009 | TX73_005880 | | L,D-transpeptidase | insig. | 41 | 16 |
| | Rhodopseudomonas palustris CGA009 | TX73_018715 | | L,D-transpeptidase family protein | no data | 39 | 17 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c34770 | | Uncharacterized protein conserved in bacteria | sig. | 38 | 18 |
| | Rhodopseudomonas palustris CGA009 | TX73_024925 | | L,D-transpeptidase | insig. | 43 | 15 |
| | Rhodopseudomonas palustris CGA009 | TX73_008305 | | L,D-transpeptidase | insig. | 39 | 15 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF3564 | | L,D-transpeptidase YnhG | insig. | 36 | 19 |
| | Klebsiella michiganensis M5al | BWI76_RS16970 | | murein L,D-transpeptidase | sig. | 36 | 18 |
| | Escherichia coli BL21 | ECD_01647 | | murein L,D-transpeptidase | no data | 38 | 18 |
| | Escherichia fergusonii Becca | EFB2_02314 | | putative L,D-transpeptidase YnhG | insig. | 38 | 18 |
| | Escherichia coli ECOR27 | NOLOHH_17800 | ldtE | L,D-transpeptidase LdtE | insig. | 38 | 18 |
| | Escherichia coli ECOR38 | HEPCGN_05665 | ldtE | L,D-transpeptidase LdtE | insig. | 38 | 18 |
| | Escherichia coli ECRC100 | OKFHMN_27280 | ldtE | L,D-transpeptidase LdtE | insig. | 38 | 18 |
| | Escherichia coli ECRC101 | MCAODC_18130 | ldtE | L,D-transpeptidase LdtE | insig. | 38 | 18 |
| | Escherichia coli ECRC102 | NIAGMN_00785 | ldtE | L,D-transpeptidase LdtE | insig. | 38 | 18 |
| | Escherichia coli ECRC62 | BNILDI_16590 | ldtE | L,D-transpeptidase LdtE | insig. | 38 | 18 |
| | Escherichia coli ECRC98 | JDDGAC_01855 | ldtE | L,D-transpeptidase LdtE | insig. | 38 | 18 |
| | Escherichia coli ECRC99 | KEDOAH_00830 | ldtE | L,D-transpeptidase LdtE | no data | 38 | 18 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02046 | | putative L,D-transpeptidase YnhG | insig. | 38 | 18 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS09385 | | L,D-transpeptidase LdtE | insig. | 38 | 18 |
| | Escherichia coli BW25113 | b1678 | ynhG | hypothetical protein (NCBI) | insig. | 38 | 18 |
| | Xanthobacter sp. DMC5 | GFF2633 | | putative L,D-transpeptidase YbiS | insig. | 47 | 14 |
| | Enterobacter sp. TBS_079 | MPMX20_01949 | | putative L,D-transpeptidase YnhG | insig. | 23 | 59 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_0563 | | Uncharacterized protein conserved in bacteria | insig. | 33 | 25 |