Homologs of EX31_RS04340 from Rahnella sp. WP5

tyrosine-type recombinase/integrase
SEED: putative site specific recombinase

87 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Rahnella sp. WP5 EX31_RS04340 tyrosine-type recombinase/integrase insig. 100 100
o Escherichia coli ECRC62 BNILDI_11380 xerD integrase no data 53 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_17000 integrase no data 53 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS00565 site-specific integrase no data 43 99
o Pectobacterium carotovorum WPP14 HER17_RS07565 site-specific integrase insig. 38 97
o Escherichia coli ECRC101 MCAODC_11485 xerD site-specific integrase insig. 36 97
o Escherichia coli ECRC102 NIAGMN_18730 xerD site-specific integrase insig. 36 97
o Escherichia coli ECRC98 JDDGAC_24630 xerD site-specific integrase insig. 36 97
o Escherichia coli ECRC99 KEDOAH_07175 xerD site-specific integrase no data 36 97
o Escherichia coli ECRC100 OKFHMN_20960 xerD site-specific integrase cofit 36 97
o Pseudomonas sp. BP01 JOY50_RS20290 site-specific integrase no data 33 99
o Ralstonia sp. UNC404CL21Col ABZR87_RS07135 site-specific integrase insig. 32 97
o Erwinia amylovora T8 OLJFJH_05700 site-specific integrase insig. 34 94
o Erwinia tracheiphila SCR3 LU632_RS20795 site-specific integrase insig. 34 97
o Azospirillum sp. SherDot2 MPMX19_02290 hypothetical protein cofit 31 97
o Pseudomonas fluorescens FW300-N2E3 AO353_24655 hypothetical protein insig. 32 94
o Ralstonia solanacearum PSI07 RPSI07_RS22050 site-specific integrase cofit 25 98
o Shewanella sp. ANA-3 Shewana3_2175 phage integrase family protein (RefSeq) insig. 29 85
  Methylophilus sp. DMC18 GFF2005 hypothetical protein insig. 31 58
o Pseudomonas stutzeri RCH2 Psest_3432 Site-specific recombinase XerD insig. 26 96
o Serratia liquefaciens MT49 IAI46_22895 tyrosine-type recombinase/integrase insig. 26 94
o Pseudomonas segetis P6 MPMX49_00101 hypothetical protein insig. 25 88
  Klebsiella michiganensis M5al BWI76_RS14390 hypothetical protein insig. 25 56
o Enterobacter sp. TBS_079 MPMX20_02289 hypothetical protein no data 25 57
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3102 Site-specific recombinase, phage integrase family insig. 25 58
  Shewanella oneidensis MR-1 SO0950 xerD integrase/recombinase XerD (NCBI ptt file) strong 26 43
  Dickeya dianthicola 67-19 HGI48_RS03440 site-specific tyrosine recombinase XerD insig. 24 44
  Dickeya dianthicola ME23 DZA65_RS03485 site-specific tyrosine recombinase XerD no data 24 44
  Shewanella sp. ANA-3 Shewana3_3331 tyrosine recombinase XerD (RefSeq) strong 26 42
  Dickeya dadantii 3937 DDA3937_RS03300 site-specific tyrosine recombinase XerD insig. 24 44
  Bacteroides ovatus ATCC 8483 BACOVA_02123 tyrosine recombinase XerD strong 28 34
  Bacteroides thetaiotaomicron VPI-5482 BT2843 integrase (NCBI ptt file) strong 23 65
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4620 Probable DNA recombinase insig. 27 43
  Klebsiella pneumoniae MKP103 KDGMDA_04110 type 1 fimbria switch DNA invertase FimB sig. 27 39
  Kangiella aquimarina DSM 16071 B158DRAFT_2265 tyrosine recombinase XerD strong 24 41
  Escherichia fergusonii Becca EFB2_03726 ISKra4 family transposase ISCep1 insig. 28 36
  Escherichia coli Nissle 1917 ECOLIN_RS02040 tyrosine-type DNA invertase IpbA no data 28 36
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS02835 integrase strong 31 34
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03368 ISKra4 family transposase ISCep1 insig. 28 36
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04705 site-specific tyrosine recombinase XerD strong 27 34
  Pseudomonas simiae WCS417 PS417_25375 hypothetical protein insig. 54 9
  Dechlorosoma suillum PS Dsui_1217 tyrosine recombinase XerD cofit 25 35
  Klebsiella michiganensis M5al BWI76_RS23550 tyrosine recombinase insig. 26 38
  Serratia liquefaciens MT49 IAI46_20730 site-specific tyrosine recombinase XerD insig. 24 41
  Shewanella loihica PV-4 Shew_0770 tyrosine recombinase XerD (RefSeq) strong 24 42
  Klebsiella michiganensis M5al BWI76_RS23545 tyrosine recombinase insig. 29 36
  Phocaeicola dorei CL03T12C01 ABI39_RS03835 tyrosine-type recombinase/integrase no data 27 43
  Erwinia amylovora T8 OLJFJH_08835 site-specific tyrosine recombinase XerD strong 24 34
  Mycobacterium tuberculosis H37Rv Rv2894c Probable integrase/recombinase XerC no data 23 33
  Escherichia coli Nissle 1917 ECOLIN_RS13600 tyrosine-type DNA invertase IpuA no data 28 42
  Rahnella sp. WP5 EX31_RS13480 site-specific tyrosine recombinase XerD strong 24 41
  Pantoea sp. MT58 IAI47_03820 site-specific tyrosine recombinase XerD strong 24 41
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS15880 site-specific tyrosine recombinase XerD cofit 24 41
  Marinobacter adhaerens HP15 HP15_762 site-specific tyrosine recombinase XerD insig. 22 43
  Shewanella amazonensis SB2B Sama_2739 integrase/recombinase XerD (RefSeq) strong 21 47
  Pseudomonas simiae WCS417 PS417_25380 hypothetical protein insig. 35 16
  Escherichia coli ECOR38 HEPCGN_21675 ipuA tyrosine-type DNA invertase IpuA insig. 27 42
  Burkholderia phytofirmans PsJN BPHYT_RS25760 integrase insig. 26 55
  Escherichia coli ECRC100 OKFHMN_11610 fimE type 1 fimbria switch DNA invertase FimE cofit 29 36
  Escherichia coli ECRC101 MCAODC_02125 fimE type 1 fimbria switch DNA invertase FimE insig. 29 36
  Escherichia coli ECRC102 NIAGMN_09460 fimE type 1 fimbria switch DNA invertase FimE cofit 29 36
  Escherichia coli ECRC62 BNILDI_07660 fimE type 1 fimbria switch DNA invertase FimE strong 29 36
  Escherichia coli ECRC98 JDDGAC_15205 fimE type 1 fimbria switch DNA invertase FimE insig. 29 36
  Escherichia coli ECRC99 KEDOAH_16535 fimE type 1 fimbria switch DNA invertase FimE no data 29 36
  Escherichia fergusonii Becca EFB2_04132 ISKra4 family transposase ISCep1 insig. 28 36
  Escherichia coli ECOR27 NOLOHH_03940 fimB type 1 fimbria switch DNA invertase FimB cofit 28 36
  Escherichia coli ECOR38 HEPCGN_09630 fimB type 1 fimbria switch DNA invertase FimB insig. 28 36
  Escherichia coli ECRC100 OKFHMN_11615 fimB type 1 fimbria switch DNA invertase FimB insig. 28 36
  Escherichia coli ECRC101 MCAODC_02130 fimB type 1 fimbria switch DNA invertase FimB insig. 28 36
  Escherichia coli ECRC102 NIAGMN_09465 fimB type 1 fimbria switch DNA invertase FimB cofit 28 36
  Escherichia coli ECRC62 BNILDI_07655 fimB type 1 fimbria switch DNA invertase FimB cofit 28 36
  Escherichia coli ECRC98 JDDGAC_15210 fimB type 1 fimbria switch DNA invertase FimB insig. 28 36
  Escherichia coli ECRC99 KEDOAH_16530 fimB type 1 fimbria switch DNA invertase FimB no data 28 36
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03755 ISKra4 family transposase ISCep1 insig. 28 36
  Escherichia coli Nissle 1917 ECOLIN_RS24750 type 1 fimbria switch DNA invertase FimB strong 28 36
  Escherichia coli BW25113 b4312 fimB tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) strong 28 36
  Klebsiella pneumoniae MKP103 KDGMDA_04300 site-specific tyrosine recombinase XerD sig. 25 33
  Bacteroides stercoris CC31F HMPREF1181_RS01250 site-specific tyrosine recombinase XerD insig. 28 34
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09680 site-specific tyrosine recombinase XerD strong 26 35
  Klebsiella michiganensis M5al BWI76_RS23815 site-specific tyrosine recombinase XerD no data 25 33
  Serratia liquefaciens MT49 IAI46_13845 tyrosine-type recombinase/integrase insig. 22 32
  Shewanella oneidensis MR-1 SO2037 site-specific recombinase, phage integrase family (NCBI ptt file) insig. 26 34
  Phocaeicola dorei CL03T12C01 ABI39_RS07000 site-specific tyrosine recombinase XerD sig. 27 34
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS17800 tyrosine-type recombinase/integrase insig. 27 36
  Pectobacterium carotovorum WPP14 HER17_RS17890 site-specific tyrosine recombinase XerD strong 23 45
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09445 tyrosine-type recombinase/integrase sig. 26 43
  Vibrio cholerae E7946 ATCC 55056 CSW01_15405 integron integrase insig. 27 31