Conservation of cofitness between SMc00114 and SMc01275 in Sinorhizobium meliloti 1021

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc00114 protease II oligopeptidase B hydrolase serine protease 1.0 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.62 7
Rhizobium sp. OAE497 0.85 ABIE40_RS04845 S9 family peptidase 0.81 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Agrobacterium fabrum C58 0.79 Atu0897 protease II 0.81 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00985 protease II PtrB 0.39 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 67
Caulobacter crescentus NA1000 0.50 CCNA_00985 protease II PtrB 0.39 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.49 A4249_RS06115 S9 family peptidase 0.37 A4249_RS07865 RluA family pseudouridine synthase low > 48
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_2324 Protease II 0.26 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) low > 40
Sphingomonas koreensis DSMZ 15582 0.38 Ga0059261_1842 Protease II 0.40 Ga0059261_1033 pseudouridine synthase, RluA family — —
Alteromonas macleodii MIT1002 0.36 MIT1002_02578 Protease 2 0.26 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C low > 70
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.842.1 Protease II (EC 3.4.21.83) 0.24 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.38 33
Lysobacter sp. OAE881 0.35 ABIE51_RS03010 S9 family peptidase 0.24 ABIE51_RS11800 RluA family pseudouridine synthase low > 62
Shewanella sp. ANA-3 0.34 Shewana3_0135 oligopeptidase B (RefSeq) 0.25 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) low > 73
Rahnella sp. WP5 0.34 EX31_RS24750 prolyl oligopeptidase family serine peptidase 0.25 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89
Serratia liquefaciens MT49 0.33 IAI46_09975 prolyl oligopeptidase family serine peptidase 0.22 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Shewanella amazonensis SB2B 0.32 Sama_0144 oligopeptidase B (RefSeq) 0.25 Sama_1988 pseudouridylate synthase (RefSeq) low > 62
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_01886 Protease 2 0.25 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Escherichia fergusonii Becca 0.32 EFB2_02099 Protease 2 0.25 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Escherichia coli ECRC101 0.32 MCAODC_19025 ptrB oligopeptidase B 0.25 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli ECOR38 0.32 HEPCGN_04780 ptrB oligopeptidase B 0.25 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli ECRC100 0.32 OKFHMN_26380 ptrB oligopeptidase B 0.25 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 80
Escherichia coli ECRC62 0.32 BNILDI_15685 ptrB oligopeptidase B 0.25 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECOR27 0.32 NOLOHH_16890 ptrB oligopeptidase B 0.25 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECRC102 0.32 NIAGMN_01680 ptrB oligopeptidase B 0.25 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC99 0.32 KEDOAH_01725 ptrB oligopeptidase B 0.25 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC98 0.32 JDDGAC_00955 ptrB oligopeptidase B 0.25 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Escherichia coli BL21 0.32 ECD_01816 protease II 0.25 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase low > 61
Escherichia coli BW25113 0.32 b1845 ptrB protease II (NCBI) 0.25 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Enterobacter sp. TBS_079 0.32 MPMX20_02752 Protease 2 0.25 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF1624 Protease II (EC 3.4.21.83) 0.25 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78
Enterobacter asburiae PDN3 0.31 EX28DRAFT_0709 Protease II 0.26 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Pseudomonas sp. RS175 0.31 PFR28_00723 Dipeptidyl aminopeptidase BI 0.26 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Pectobacterium carotovorum WPP14 0.31 HER17_RS11765 prolyl oligopeptidase family serine peptidase 0.25 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Pantoea sp. MT58 0.31 IAI47_08515 prolyl oligopeptidase family serine peptidase 0.24 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Klebsiella michiganensis M5al 0.31 BWI76_RS18075 oligopeptidase B 0.25 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase low > 92
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_1574 oligopeptidase B, Serine peptidase, MEROPS family S09A 0.26 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_1574 oligopeptidase B, Serine peptidase, MEROPS family S09A 0.26 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas stutzeri RCH2 0.31 Psest_2655 Protease II 0.26 Psest_1680 pseudouridine synthase, RluA family — —
Pseudomonas fluorescens FW300-N2C3 0.31 AO356_04360 peptidase S9 0.25 AO356_20125 23S rRNA pseudouridylate synthase low > 104
Dickeya dadantii 3937 0.31 DDA3937_RS10150 prolyl oligopeptidase family serine peptidase 0.21 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Pseudomonas putida KT2440 0.31 PP_4583 putative Peptidase 0.26 PP_1906 ribosomal large subunit pseudouridine synthase C low > 96
Dickeya dianthicola ME23 0.31 DZA65_RS10595 prolyl oligopeptidase family serine peptidase 0.22 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Dickeya dianthicola 67-19 0.31 HGI48_RS10180 prolyl oligopeptidase family serine peptidase 0.22 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_2713 Protease II (EC 3.4.21.83) 0.25 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 103
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_3357 Protease II (EC 3.4.21.83) 0.25 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Shewanella loihica PV-4 0.30 Shew_0039 oligopeptidase B (RefSeq) 0.26 Shew_1594 RluA family pseudouridine synthase (RefSeq) low > 60
Pseudomonas sp. S08-1 0.30 OH686_05270 Protease II 0.26 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase low > 80
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_17950 peptidase S9 0.25 AO353_01405 23S rRNA pseudouridylate synthase low > 101
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_4484 Protease II (EC 3.4.21.83) 0.25 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 87
Pseudomonas simiae WCS417 0.29 PS417_07445 peptidase S9 0.26 PS417_21480 23S rRNA pseudouridylate synthase low > 88
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS07530 S9 family peptidase 0.25 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS07530 S9 family peptidase 0.25 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_14340 S9 family peptidase 0.25 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 62
Rhodanobacter denitrificans FW104-10B01 0.13 LRK54_RS07925 prolyl oligopeptidase family serine peptidase 0.28 LRK54_RS17895 RluA family pseudouridine synthase low > 59
Rhodanobacter denitrificans MT42 0.13 LRK55_RS07655 prolyl oligopeptidase family serine peptidase 0.28 LRK55_RS17750 RluA family pseudouridine synthase low > 63
Rhodanobacter sp. FW510-T8 0.13 OKGIIK_14405 Peptidase S9 0.28 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase low > 52
Dyella japonica UNC79MFTsu3.2 0.13 ABZR86_RS17900 prolyl oligopeptidase family serine peptidase 0.26 ABZR86_RS02725 RluA family pseudouridine synthase low > 74

Not shown: 6 genomes with orthologs for SMc00114 only; 28 genomes with orthologs for SMc01275 only