Conservation of cofitness between RR42_RS19480 and RR42_RS19520 in Cupriavidus basilensis FW507-4G11

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS19480 secretion system protein G 1.0 RR42_RS19520 general secretion pathway protein GspD 0.89 4
Ralstonia sp. UNC404CL21Col 0.84 ABZR87_RS03410 type II secretion system major pseudopilin GspG 0.55 ABZR87_RS03450 type II secretion system secretin GspD 0.94 2
Ralstonia solanacearum PSI07 0.84 RPSI07_RS09560 type II secretion system protein GspG 0.55 RPSI07_RS09520 type II secretion system protein GspD 0.70 44
Ralstonia solanacearum IBSBF1503 0.81 RALBFv3_RS07700 type II secretion system protein GspG 0.55 RALBFv3_RS07740 type II secretion system protein GspD 0.94 4
Ralstonia solanacearum UW163 0.81 UW163_RS05925 type II secretion system protein GspG 0.55 UW163_RS05885 type II secretion system protein GspD — —
Ralstonia solanacearum GMI1000 0.81 RS_RS15600 type II secretion system protein GspG 0.55 RS_RS15640 type II secretion system protein GspD 0.87 2
Paraburkholderia graminis OAS925 0.75 ABIE53_000300 general secretion pathway protein G 0.19 ABIE53_000295 general secretion pathway protein D 0.86 4
Paraburkholderia sabiae LMG 24235 0.75 QEN71_RS29530 type II secretion system protein GspG 0.20 QEN71_RS29510 type II secretion system secretin GspD 0.53 3
Paraburkholderia bryophila 376MFSha3.1 0.75 H281DRAFT_02352 general secretion pathway protein G 0.19 H281DRAFT_02356 general secretion pathway protein D 0.59 1
Burkholderia phytofirmans PsJN 0.74 BPHYT_RS19615 general secretion pathway protein G 0.19 BPHYT_RS19595 general secretion pathway protein GspD — —
Acidovorax sp. GW101-3H11 0.67 Ac3H11_2038 General secretion pathway protein G 0.37 Ac3H11_2030 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) 0.90 2
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF1382 General secretion pathway protein G 0.38 GFF1390 General secretion pathway protein D low > 90
Variovorax sp. SCN45 0.65 GFF5244 General secretion pathway protein G 0.36 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) 0.40 40
Variovorax sp. OAS795 0.64 ABID97_RS06990 type II secretion system major pseudopilin GspG 0.35 ABID97_RS06950 type II secretion system secretin GspD low > 91
Pseudomonas stutzeri RCH2 0.61 Psest_4200 general secretion pathway protein G 0.18 Psest_2577 general secretion pathway protein D low > 67
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS11870 type II secretion system protein GspG 0.31 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas fluorescens SBW25 0.59 PFLU_RS11870 type II secretion system protein GspG 0.31 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas sp. S08-1 0.59 OH686_11775 type II secretion system protein G 0.21 OH686_11840 type II secretion system protein D — —
Pseudomonas simiae WCS417 0.58 PS417_11275 general secretion pathway protein GspG 0.31 PS417_11295 general secretion pathway protein GspD low > 88
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_647 General secretion pathway protein G 0.32 Pf6N2E2_651 General secretion pathway protein D low > 103
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_24770 type II secretion system protein GspG 0.31 AO356_24790 type II secretion system protein GspD low > 104
Pseudomonas sp. RS175 0.56 PFR28_01746 Type II secretion system protein G 0.31 PFR28_01750 Secretin XcpQ low > 88
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_13775 type II secretion system protein GspG 0.17 CSW01_13790 type II secretion system protein GspD — —
Erwinia tracheiphila SCR3 0.52 LU632_RS25245 gspG type II secretion system major pseudopilin GspG 0.16 LU632_RS25230 gspD type II secretion system secretin GspD low > 74
Escherichia coli BL21 0.52 ECD_02835 putative type II secretion protein GspG 0.19 ECD_02838 putative type II secretion protein GspD 0.98 1
Escherichia coli Nissle 1917 0.52 ECOLIN_RS17070 type II secretion system major pseudopilin GspG 0.19 ECOLIN_RS17085 type II secretion system secretin GspD low > 55
Escherichia fergusonii Becca 0.52 EFB2_00848 Type II secretion system protein G 0.19 EFB2_00845 Secretin GspD 2 low > 86
Escherichia coli ECOR27 0.52 NOLOHH_10990 gspG general secretion pathway protein G 0.19 NOLOHH_10975 gspD general secretion pathway protein D low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00742 Type II secretion system protein G 0.19 OHPLBJKB_00739 Type II secretion system protein D 0.34 43
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.945.1 General secretion pathway protein G 0.17 Xcc-8004.942.1 hypothetical protein low > 74
Escherichia coli ECOR38 0.52 HEPCGN_18065 gspG general secretion pathway protein G 0.19 HEPCGN_18050 gspD general secretion pathway protein D 0.94 2
Dickeya dianthicola ME23 0.51 DZA65_RS15665 type II secretion system major pseudopilin GspG 0.13 DZA65_RS16270 type II secretion system secretin GspD low > 75
Shewanella loihica PV-4 0.51 Shew_3616 general secretion pathway protein G (RefSeq) 0.16 Shew_3619 general secretion pathway protein D (RefSeq) — —
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_12560 type II secretion system protein GspG 0.16 AO353_12545 type II secretion system protein GspD low > 101
Dickeya dadantii 3937 0.51 DDA3937_RS14785 type II secretion system major pseudopilin GspG 0.16 DDA3937_RS14800 type II secretion system secretin GspD 0.70 1
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00175 type II secretion pathway protein G 0.20 CCNA_00172 type II secretion pathway protein D low > 67
Caulobacter crescentus NA1000 0.50 CCNA_00175 type II secretion pathway protein G 0.20 CCNA_00172 type II secretion pathway protein D 0.57 32
Escherichia coli ECRC100 0.49 OKFHMN_00270 gspG type II secretion system major pseudopilin GspG 0.15 OKFHMN_00285 etpD variant type II secretion system secretin EtpD low > 80
Escherichia coli ECRC98 0.49 JDDGAC_30310 gspG type II secretion system major pseudopilin GspG 0.15 JDDGAC_30295 etpD variant type II secretion system secretin EtpD low > 86
Escherichia coli ECRC102 0.49 NIAGMN_28590 gspG type II secretion system major pseudopilin GspG 0.15 NIAGMN_28605 etpD variant type II secretion system secretin EtpD — —
Escherichia coli ECRC101 0.49 MCAODC_15280 gspG type II secretion system major pseudopilin GspG 0.15 MCAODC_15265 etpD variant type II secretion system secretin EtpD low > 87
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_263 General secretion pathway protein G 0.16 PfGW456L13_266 General secretion pathway protein D low > 87
Shewanella amazonensis SB2B 0.48 Sama_0172 general secretion pathway protein G (RefSeq) 0.17 Sama_0169 type II and III secretion system protein (RefSeq) — —
Alteromonas macleodii MIT1002 0.48 MIT1002_03979 Pullulanase secretion protein PulG 0.18 MIT1002_03976 Pullulanase secretion envelope PulD 0.99 5
Shewanella sp. ANA-3 0.47 Shewana3_0154 general secretion pathway protein G (RefSeq) 0.16 Shewana3_0151 general secretion pathway protein D (RefSeq) 0.87 2
Enterobacter asburiae PDN3 0.47 EX28DRAFT_2076 type II secretion system protein G 0.18 EX28DRAFT_2079 type II secretion system protein D low > 76
Shewanella oneidensis MR-1 0.47 SO0169 gspG general secretion pathway protein G (NCBI ptt file) 0.16 SO0166 gspD general secretion pathway protein D (NCBI ptt file) 0.95 1
Acinetobacter radioresistens SK82 0.39 MPMX26_00284 Type II secretion system protein G 0.20 MPMX26_00196 Secretin XcpQ 0.57 26
Sphingomonas koreensis DSMZ 15582 0.38 Ga0059261_3949 type II secretion system protein G 0.18 Ga0059261_3945 type II secretion system protein D 0.75 7
Escherichia coli BW25113 0.37 b3328 gspG pseudopilin, cryptic, general secretion pathway (NCBI) 0.18 b3325 yheF putative general protein secretion protein (VIMSS) low > 76
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS13105 type II secretion system major pseudopilin GspG 0.12 ABZR86_RS13065 type II secretion system secretin GspD 0.96 2

Not shown: 15 genomes with orthologs for RR42_RS19480 only; 0 genomes with orthologs for RR42_RS19520 only