| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS19740 | | 16S rRNA methyltransferase | 1.0 | RR42_RS17865 | | N-acetyl-anhydromuranmyl-L-alanine amidase | 0.34 | 16 |
| Ralstonia solanacearum UW163 | 0.63 | UW163_RS05115 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.58 | UW163_RS07545 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.63 | RALBFv3_RS08495 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.58 | RALBFv3_RS06080 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS08730 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.57 | RPSI07_RS11160 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia sp. UNC404CL21Col | 0.62 | ABZR87_RS03815 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.57 | ABZR87_RS01745 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.61 | RS_RS16360 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.56 | RS_RS14030 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.54 | QEN71_RS00655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.53 | QEN71_RS27225 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.54 | BPHYT_RS01940 | | 16S rRNA methyltransferase | 0.54 | BPHYT_RS17065 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.52 | HSERO_RS23345 | | 16S rRNA methyltransferase | 0.47 | HSERO_RS01880 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 78 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.52 | H281DRAFT_02152 | | 16S rRNA (cytidine1402-2'-O)-methyltransferase | 0.53 | H281DRAFT_06273 | | AmpD protein | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.50 | ABIE53_000470 | | 16S rRNA (cytidine1402-2'-O)-methyltransferase | 0.53 | ABIE53_003579 | | AmpD protein | 0.56 | 7 |
| Variovorax sp. SCN45 | 0.44 | GFF3735 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) | 0.46 | GFF4433 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS14320 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.43 | ABCV34_RS09025 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF2715 | | rRNA small subunit methyltransferase I | 0.44 | GFF594 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_3270 | | probable S-adenosylmethionine-dependent methyltransferase, YraL family | 0.50 | Psest_0725 | | Negative regulator of beta-lactamase expression | 0.23 | 13 |
| Marinobacter adhaerens HP15 | 0.41 | HP15_554 | | tetrapyrrole methylase family protein | 0.48 | HP15_1307 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.41 | CSW01_03090 | | rRNA (cytidine-2'-O-)-methyltransferase | 0.43 | CSW01_12260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 62 |
| Escherichia coli Nissle 1917 | 0.40 | ECOLIN_RS18085 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.46 | ECOLIN_RS00590 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 55 |
| Escherichia fergusonii Becca | 0.40 | EFB2_00677 | | Ribosomal RNA small subunit methyltransferase I | 0.46 | EFB2_03939 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Escherichia coli ECOR38 | 0.40 | HEPCGN_17110 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.46 | HEPCGN_08505 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 87 |
| Escherichia coli ECRC98 | 0.40 | JDDGAC_21860 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.46 | JDDGAC_14120 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Escherichia coli ECRC102 | 0.40 | NIAGMN_15995 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.46 | NIAGMN_08375 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC99 | 0.40 | KEDOAH_09915 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.46 | KEDOAH_17630 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.40 | Psyr_4112 | | Protein of unknown function UPF0011 | 0.50 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Escherichia coli ECRC100 | 0.40 | OKFHMN_18235 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.46 | OKFHMN_10525 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 80 |
| Escherichia coli ECRC101 | 0.40 | MCAODC_08755 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.46 | MCAODC_01040 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.40 | Psyr_4112 | | Protein of unknown function UPF0011 | 0.50 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_17110 | | methyltransferase | 0.49 | AO356_07360 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 104 |
| Shewanella sp. ANA-3 | 0.40 | Shewana3_3879 | | hypothetical protein (RefSeq) | 0.43 | Shewana3_0423 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 73 |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_5346 | | rRNA small subunit methyltransferase I | 0.50 | Pf6N2E2_3344 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_953 | | rRNA small subunit methyltransferase I | 0.50 | Pf1N1B4_1151 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.39 | GFF1521 | | rRNA small subunit methyltransferase I | 0.45 | GFF129 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 78 |
| Pseudomonas fluorescens FW300-N2E3 | 0.39 | AO353_15290 | | methyltransferase | 0.52 | AO353_05510 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 101 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_04590 | | methyltransferase | 0.52 | PS417_03935 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 88 |
| Pseudomonas sp. RS175 | 0.38 | PFR28_03597 | | Ribosomal RNA small subunit methyltransferase I | 0.50 | PFR28_00100 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 88 |
| Dickeya dadantii 3937 | 0.38 | DDA3937_RS01715 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.44 | DDA3937_RS17945 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 74 |
| Pseudomonas sp. S08-1 | 0.37 | OH686_08340 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.50 | OH686_16530 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | low | > 80 |
| Klebsiella michiganensis M5al | 0.37 | BWI76_RS24910 | | rRNA (cytidine-2'-O-)-methyltransferase | 0.45 | BWI76_RS04850 | | N-acetylmuramoyl-L-alanine amidase | low | > 92 |
| Enterobacter asburiae PDN3 | 0.37 | EX28DRAFT_3195 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.46 | EX28DRAFT_3703 | | N-acetylmuramoyl-L-alanine amidase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.37 | PfGW456L13_1643 | | rRNA small subunit methyltransferase I | 0.51 | PfGW456L13_5081 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Kangiella aquimarina DSM 16071 | 0.37 | B158DRAFT_2109 | | probable S-adenosylmethionine-dependent methyltransferase, YraL family | 0.43 | B158DRAFT_2134 | | Negative regulator of beta-lactamase expression | low | > 40 |
| Enterobacter sp. TBS_079 | 0.37 | MPMX20_04050 | | Ribosomal RNA small subunit methyltransferase I | 0.46 | MPMX20_00801 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 85 |
| Rahnella sp. WP5 | 0.36 | EX31_RS12550 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.46 | EX31_RS03510 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 89 |
| Serratia liquefaciens MT49 | 0.35 | IAI46_22295 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.43 | IAI46_03535 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
Not shown: 37 genomes with orthologs for RR42_RS19740 only; 0 genomes with orthologs for RR42_RS17865 only