Conservation of cofitness between RR42_RS00905 and RR42_RS07845 in Cupriavidus basilensis FW507-4G11

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS00905 haloacid dehalogenase 1.0 RR42_RS07845 transcription-repair coupling factor 0.41 1
Ralstonia solanacearum PSI07 0.66 RPSI07_RS22825 HAD family phosphatase 0.82 RPSI07_RS16040 transcription-repair coupling factor low > 81
Ralstonia solanacearum GMI1000 0.66 RS_RS01330 HAD family phosphatase 0.82 RS_RS08275 transcription-repair coupling factor low > 80
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS06290 HAD family phosphatase 0.82 ABZR87_RS13240 transcription-repair coupling factor low > 80
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS10490 HAD family phosphatase 0.82 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS03090 HAD family phosphatase 0.82 UW163_RS14755 transcription-repair coupling factor
Paraburkholderia graminis OAS925 0.41 ABIE53_006171 HAD superfamily hydrolase (TIGR01509 family) 0.77 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Acidovorax sp. GW101-3H11 0.41 Ac3H11_3005 Putative phosphatase YieH 0.64 Ac3H11_328 Transcription-repair coupling factor low > 79
Variovorax sp. OAS795 0.41 ABID97_RS25155 HAD family phosphatase 0.64 ABID97_RS17285 transcription-repair coupling factor low > 91
Variovorax sp. SCN45 0.40 GFF2001 Putative phosphatase YieH 0.64 GFF412 Transcription-repair coupling factor low > 127
Synechococcus elongatus PCC 7942 0.39 Synpcc7942_0085 HAD-superfamily hydrolase subfamily IA, variant 3 0.26 Synpcc7942_1326 mfd transcription-repair coupling factor low > 38
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS24950 HAD family hydrolase 0.77 BPHYT_RS09290 helicase
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02444 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 0.76 H281DRAFT_00880 transcription-repair coupling factor low > 103
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS37130 HAD family phosphatase 0.76 QEN71_RS22060 transcription-repair coupling factor low > 153
Sinorhizobium meliloti 1021 0.30 SMc01502 hydrolase phosphatase 0.29 SMc04450 transcription-repair coupling factor low > 103
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.1753.1 hydrolase 0.44 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Rhizobium sp. OAE497 0.29 ABIE40_RS16990 HAD family hydrolase 0.29 ABIE40_RS09310 transcription-repair coupling factor low > 107
Phaeobacter inhibens DSM 17395 0.28 PGA1_c29250 putative haloacid dehalogenase-like hydrolase 0.28 PGA1_c14920 transcription-repair-coupling factor Mfd low > 62
Rhodopseudomonas palustris CGA009 0.27 TX73_002330 HAD family hydrolase 0.30 TX73_013805 transcription-repair coupling factor low > 86
Agrobacterium fabrum C58 0.26 Atu0790 hypothetical protein 0.29 Atu1778 transcription-repair coupling factor low > 89
Rahnella sp. WP5 0.26 EX31_RS06035 6-phosphogluconate phosphatase 0.44 EX31_RS24520 transcription-repair coupling factor low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF1739 Putative phosphatase YieH 0.45 GFF3397 Transcription-repair coupling factor low > 78
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS00780 sugar transferase 0.72 HSERO_RS15180 transcription-repair coupling factor low > 78
Klebsiella michiganensis M5al 0.25 BWI76_RS00115 6-phosphogluconate phosphatase 0.44 BWI76_RS11205 transcription-repair coupling factor low > 92
Dickeya dadantii 3937 0.25 DDA3937_RS21430 6-phosphogluconate phosphatase 0.45 DDA3937_RS13000 transcription-repair coupling factor low > 74
Dickeya dianthicola 67-19 0.25 HGI48_RS21600 6-phosphogluconate phosphatase 0.44 HGI48_RS13065 transcription-repair coupling factor low > 71
Dickeya dianthicola ME23 0.25 DZA65_RS22585 6-phosphogluconate phosphatase 0.44 DZA65_RS13530 transcription-repair coupling factor 0.53 5
Enterobacter asburiae PDN3 0.24 EX28DRAFT_3999 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 0.45 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_2217 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 0.30 Ga0059261_0960 transcription-repair coupling factor (mfd)
Pectobacterium carotovorum WPP14 0.24 HER17_RS21735 6-phosphogluconate phosphatase 0.45 HER17_RS08775 transcription-repair coupling factor low > 75
Escherichia coli ECRC101 0.24 MCAODC_05440 yieH 6-phosphogluconate phosphatase 0.45 MCAODC_22830 mfd transcription-repair coupling factor low > 87
Escherichia coli BW25113 0.24 b3715 yieH predicted hydrolase (NCBI) 0.45 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli ECRC100 0.24 OKFHMN_14930 yieH 6-phosphogluconate phosphatase 0.45 OKFHMN_03470 mfd transcription-repair coupling factor low > 80
Escherichia coli ECRC102 0.24 NIAGMN_12685 yieH 6-phosphogluconate phosphatase 0.45 NIAGMN_24360 mfd transcription-repair coupling factor
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS04845 HAD-IA family hydrolase 0.30 A4249_RS04775 transcription-repair coupling factor low > 48
Escherichia coli ECOR38 0.24 HEPCGN_13635 yieH 6-phosphogluconate phosphatase 0.45 HEPCGN_24015 mfd transcription-repair coupling factor low > 87
Escherichia fergusonii Becca 0.24 EFB2_04917 6-phosphogluconate phosphatase 0.45 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECRC99 0.24 KEDOAH_13220 yieH 6-phosphogluconate phosphatase 0.45 KEDOAH_24285 mfd transcription-repair coupling factor
Escherichia coli ECRC98 0.24 JDDGAC_18550 yieH 6-phosphogluconate phosphatase 0.45 JDDGAC_07130 mfd transcription-repair coupling factor low > 86
Enterobacter sp. TBS_079 0.24 MPMX20_04644 6-phosphogluconate phosphatase 0.45 MPMX20_01795 Transcription-repair-coupling factor low > 85
Escherichia coli BL21 0.23 ECD_03599 phosphoenolpyruvate and 6-phosphogluconate phosphatase 0.45 ECD_01110 transcription-repair coupling factor low > 61
Escherichia coli ECRC62 0.23 BNILDI_04450 yieH 6-phosphogluconate phosphatase 0.45 BNILDI_19160 mfd transcription-repair coupling factor low > 75
Escherichia coli ECOR27 0.23 NOLOHH_07080 yieH 6-phosphogluconate phosphatase 0.45 NOLOHH_20995 mfd transcription-repair coupling factor low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_04338 6-phosphogluconate phosphatase 0.45 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS10295 HAD-IA family hydrolase 0.47 PFLU_RS07710 transcription-repair coupling factor 0.20 101
Bosea sp. OAE506 0.23 ABIE41_RS00405 HAD-IA family hydrolase 0.29 ABIE41_RS15825 transcription-repair coupling factor low > 77
Pseudomonas fluorescens SBW25 0.23 PFLU_RS10295 HAD-IA family hydrolase 0.47 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas simiae WCS417 0.22 PS417_09695 hydrolase 0.47 PS417_07635 transcription-repair coupling factor low > 88
Serratia liquefaciens MT49 0.21 IAI46_25215 6-phosphogluconate phosphatase 0.44 IAI46_10320 transcription-repair coupling factor low > 86
Pantoea sp. MT58 0.19 IAI47_18805 6-phosphogluconate phosphatase 0.46 IAI47_11975 transcription-repair coupling factor low > 76
Echinicola vietnamensis KMM 6221, DSM 17526 0.18 Echvi_1029 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED 0.24 Echvi_1312 transcription-repair coupling factor (mfd) low > 79
Magnetospirillum magneticum AMB-1 0.17 AMB_RS00805 haloacid dehalogenase 0.31 AMB_RS12390 transcription-repair coupling factor low > 64
Shewanella sp. ANA-3 0.17 Shewana3_0432 2-deoxyglucose-6-phosphatase (RefSeq) 0.45 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Shewanella oneidensis MR-1 0.16 SO0431 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family (NCBI ptt file) 0.46 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Azospirillum sp. SherDot2 0.16 MPMX19_01934 Phosphorylated carbohydrates phosphatase 0.32 MPMX19_00876 Transcription-repair-coupling factor low > 112
Phocaeicola dorei CL03T12C01 0.15 ABI39_RS14020 HAD family phosphatase 0.25 ABI39_RS11420 transcription-repair coupling factor 0.46 18
Erwinia tracheiphila SCR3 0.15 LU632_RS15700 yqaB fructose-1-phosphate/6-phosphogluconate phosphatase 0.44 LU632_RS14730 mfd transcription-repair coupling factor low > 74
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_06975 phosphatase 0.26 CA264_15820 transcription-repair coupling factor low > 74
Mycobacterium tuberculosis H37Rv 0.11 Rv3400 Probable hydrolase 0.25 Rv1020 Probable transcription-repair coupling factor Mfd (TRCF) low > 58

Not shown: 5 genomes with orthologs for RR42_RS00905 only; 34 genomes with orthologs for RR42_RS07845 only