Conservation of cofitness between RR42_RS14640 and RR42_RS03765 in Cupriavidus basilensis FW507-4G11

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS14640 histidine ammonia-lyase 1.0 RR42_RS03765 formate dehydrogenase 0.27 14
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4833 histidine ammonia-lyase 0.33 Psyr_4945 Formate dehydrogenase, subunit FdhD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4833 histidine ammonia-lyase 0.33 Psyr_4945 Formate dehydrogenase, subunit FdhD low > 86
Pseudomonas putida KT2440 0.84 PP_5032 Histidine ammonia-lyase 0.32 PP_0257 protein sulfur transferase low > 96
Pseudomonas simiae WCS417 0.84 PS417_01750 histidine ammonia-lyase 0.30 PS417_01270 iron ABC transporter substrate-binding protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_09600 histidine ammonia-lyase 0.31 AO356_10100 formate dehydrogenase family accessory protein FdhD 0.69 11
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_3799 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.31 Pf6N2E2_3890 Formate dehydrogenase chain D (EC 1.2.1.2) low > 103
Pseudomonas fluorescens SBW25 0.84 PFLU_RS01805 histidine ammonia-lyase 0.30 PFLU_RS01365 formate dehydrogenase accessory sulfurtransferase FdhD low > 109
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS01805 histidine ammonia-lyase 0.30 PFLU_RS01365 formate dehydrogenase accessory sulfurtransferase FdhD low > 109
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_12270 histidine ammonia-lyase 0.31 AO353_11830 formate dehydrogenase family accessory protein FdhD low > 101
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_1581 Histidine ammonia-lyase (EC 4.3.1.3) 0.31 Pf1N1B4_1673 Formate dehydrogenase chain D (EC 1.2.1.2) low > 87
Pseudomonas sp. RS175 0.84 PFR28_04971 Histidine ammonia-lyase 0.32 PFR28_04882 Sulfur carrier protein FdhD low > 88
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_320 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.30 PfGW456L13_408 Formate dehydrogenase chain D (EC 1.2.1.2) 0.27 19
Serratia liquefaciens MT49 0.82 IAI46_03660 histidine ammonia-lyase 0.45 IAI46_00205 formate dehydrogenase accessory sulfurtransferase FdhD low > 86
Enterobacter asburiae PDN3 0.80 EX28DRAFT_2219 histidine ammonia-lyase (EC 4.3.1.3) 0.43 EX28DRAFT_4379 formate dehydrogenase family accessory protein FdhD low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_01400 Histidine ammonia-lyase 0.43 MPMX20_04574 Sulfur carrier protein FdhD 0.15 83
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF668 Histidine ammonia-lyase (EC 4.3.1.3) 0.41 GFF2254 Formate dehydrogenase chain D (EC 1.2.1.2) low > 78
Klebsiella michiganensis M5al 0.78 BWI76_RS08740 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.42 BWI76_RS00475 sulfurtransferase FdhD low > 92
Shewanella sp. ANA-3 0.66 Shewana3_0101 histidine ammonia-lyase (RefSeq) 0.40 Shewana3_0108 formate dehydrogenase accessory protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.66 SO0098 hutH histidine ammonia-lyase (NCBI ptt file) 0.40 SO0107 fdhD formate dehydrogenase accessory protein FdhD (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.64 MIT1002_00905 Histidine ammonia-lyase 0.31 MIT1002_01712 formate dehydrogenase accessory protein low > 70
Ralstonia solanacearum GMI1000 0.58 RS_RS13250 histidine ammonia-lyase 0.36 RS_RS22200 sulfurtransferase FdhD — —
Ralstonia solanacearum PSI07 0.58 RPSI07_RS11915 histidine ammonia-lyase 0.37 RPSI07_RS04845 sulfurtransferase FdhD low > 81
Ralstonia solanacearum IBSBF1503 0.58 RALBFv3_RS05390 histidine ammonia-lyase 0.38 RALBFv3_RS18750 sulfurtransferase FdhD — —
Ralstonia solanacearum UW163 0.58 UW163_RS08235 histidine ammonia-lyase 0.38 UW163_RS20380 sulfurtransferase FdhD — —
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS23515 histidine ammonia-lyase 0.36 QEN71_RS02080 formate dehydrogenase accessory sulfurtransferase FdhD low > 153
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_04873 histidine ammonia-lyase 0.40 H281DRAFT_06437 FdhD protein low > 103
Paraburkholderia graminis OAS925 0.57 ABIE53_001729 histidine ammonia-lyase 0.34 ABIE53_000787 FdhD protein low > 113
Ralstonia sp. UNC404CL21Col 0.57 ABZR87_RS01025 histidine ammonia-lyase 0.38 ABZR87_RS19685 formate dehydrogenase accessory sulfurtransferase FdhD low > 80
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS07555 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.37 BPHYT_RS03240 formate dehydrogenase accessory protein FdhD low > 109
Azospirillum sp. SherDot2 0.54 MPMX19_04940 Histidine ammonia-lyase 0.45 MPMX19_03500 Sulfur carrier protein FdhD low > 112
Castellaniella sp019104865 MT123 0.53 ABCV34_RS12780 histidine ammonia-lyase 0.38 ABCV34_RS00240 formate dehydrogenase accessory sulfurtransferase FdhD low > 48
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.3296.1 Histidine ammonia-lyase (EC 4.3.1.3) 0.46 Xcc-8004.2194.1 Formate dehydrogenase chain D (EC 1.2.1.2) low > 74
Agrobacterium fabrum C58 0.49 Atu3933 histidine ammonia-lyase 0.33 Atu2619 NAD-dependent formate dehydrogenase, C subunit protein low > 89
Rhizobium sp. OAE497 0.49 ABIE40_RS20355 histidine ammonia-lyase 0.37 ABIE40_RS17840 formate dehydrogenase accessory sulfurtransferase FdhD 0.36 22
Sphingomonas koreensis DSMZ 15582 0.48 Ga0059261_3963 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.31 Ga0059261_3871 formate dehydrogenase family accessory protein FdhD low > 68
Caulobacter crescentus NA1000 0.48 CCNA_01010 histidine ammonia-lyase 0.29 CCNA_01300 formate dehydrogenase accessory protein fdhD low > 66
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_01010 histidine ammonia-lyase 0.29 CCNA_01300 formate dehydrogenase accessory protein fdhD low > 67
Sinorhizobium meliloti 1021 0.48 SM_b21165 Histidine ammonia-lyase (EC 4.3.1.3) (from data) 0.36 SMc03085 formate dehydrogenase accessory protein low > 103
Lysobacter sp. OAE881 0.28 ABIE51_RS13345 aromatic amino acid lyase 0.38 ABIE51_RS14800 formate dehydrogenase accessory sulfurtransferase FdhD low > 62
Escherichia coli ECOR38 0.19 HEPCGN_01360 histidine ammonia-lyase 0.45 HEPCGN_12585 fdhD formate dehydrogenase accessory sulfurtransferase FdhD low > 87

Not shown: 21 genomes with orthologs for RR42_RS14640 only; 32 genomes with orthologs for RR42_RS03765 only