| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_0324 | | transcriptional regulator, AraC family | 1.0 | Psyr_1662 | | tRNA pseudouridine synthase | 0.28 | 13 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_0324 | | transcriptional regulator, AraC family | 1.00 | Psyr_1662 | | tRNA pseudouridine synthase | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.61 | PFLU_RS00990 | | AraC family transcriptional regulator | 0.87 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.61 | PFLU_RS00990 | | AraC family transcriptional regulator | 0.87 | PFLU_RS20545 | | tRNA pseudouridine(38-40) synthase TruA | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.60 | GEMAOFIL_00418 | | putative HTH-type transcriptional regulator | 0.90 | GEMAOFIL_03941 | | tRNA pseudouridine synthase A | low | > 96 |
| Pseudomonas sp. DMC3 | 0.60 | GFF4237 | | HTH-type transcriptional regulator VirS | 0.89 | GFF792 | | tRNA pseudouridine synthase A | low | > 89 |
| Pseudomonas orientalis W4I3 | 0.60 | QF045_RS04045 | | AraC family transcriptional regulator | 0.88 | QF045_RS20705 | | tRNA pseudouridine(38-40) synthase TruA | low | > 93 |
| Pseudomonas fluorescens FW300-N2C3 | 0.60 | AO356_10640 | | AraC family transcriptional regulator | 0.88 | AO356_21435 | | pseudouridine synthase | low | > 104 |
| Pseudomonas simiae WCS417 | 0.59 | PS417_00965 | | AraC family transcriptional regulator | 0.88 | PS417_18565 | | pseudouridine synthase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.59 | Pf6N2E2_3996 | | Transcriptional regulator, AraC family | 0.91 | Pf6N2E2_70 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 103 |
| Pseudomonas sp. RS175 | 0.59 | PFR28_04771 | | putative HTH-type transcriptional regulator | 0.90 | PFR28_02817 | | tRNA pseudouridine synthase A | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.59 | Pf1N1B4_1718 | | Transcriptional regulator, AraC family | 0.92 | Pf1N1B4_7 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_11575 | | AraC family transcriptional regulator | 0.86 | AO353_20660 | | pseudouridine synthase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.58 | PfGW456L13_480 | | Transcriptional regulator, AraC family | 0.91 | PfGW456L13_3941 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 87 |
| Pseudomonas segetis P6 | 0.53 | ACVTMO_RS02530 | | AraC family transcriptional regulator | 0.70 | ACVTMO_RS15195 | truA | tRNA pseudouridine(38-40) synthase TruA | low | > 75 |
| Pseudomonas sp. S08-1 | 0.49 | OH686_11870 | | Transcriptional regulator, AraC family | 0.73 | OH686_04450 | | tRNA pseudouridine(38-40) synthase | low | > 80 |
| Acinetobacter baumannii LAC-4 | 0.32 | RR41_RS15595 | | AraC family transcriptional regulator | 0.46 | RR41_RS16860 | | tRNA pseudouridine(38-40) synthase TruA | low | > 55 |
| Pseudomonas stutzeri RCH2 | 0.28 | Psest_1877 | | AraC-type DNA-binding domain-containing proteins | 0.73 | Psest_2585 | | pseudouridylate synthase I | low | > 67 |
| Pseudomonas sp. BP01 | 0.27 | JOY50_RS01115 | | AraC family transcriptional regulator | 0.77 | JOY50_RS16595 | truA | tRNA pseudouridine(38-40) synthase TruA | low | > 84 |
| Pseudomonas aeruginosa PUPa3 | 0.26 | DQ20_RS40200 | | AraC family transcriptional regulator | 0.74 | DQ20_RS34200 | truA;go_function=pseudouridine | tRNA pseudouridine(38-40) synthase TruA | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.26 | COO64_RS21800 | | AraC family transcriptional regulator | 0.83 | COO64_RS05630 | truA | tRNA pseudouridine(38-40) synthase TruA | low | > 93 |
| Pseudomonas aeruginosa MRSN321 | 0.26 | DY961_RS00840 | | AraC family transcriptional regulator | 0.74 | DY961_RS01355 | truA;go_function=pseudouridine | tRNA pseudouridine(38-40) synthase TruA | low | > 100 |
| Pseudomonas putida KT2440 | 0.25 | PP_4508 | | putative transcriptional regulator, AraC family | 0.77 | PP_1994 | | tRNA pseudouridine (38-40)synthase | low | > 96 |
| Pseudomonas aeruginosa PA14 | 0.24 | IKLFDK_16340 | | AraC family transcriptional regulator | 0.74 | IKLFDK_15845 | | tRNA pseudouridine(38-40) synthase TruA | low | > 98 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.22 | CA264_13535 | | AraC family transcriptional regulator | 0.25 | CA264_17725 | | tRNA pseudouridine synthase A | low | > 74 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.19 | GFF4583 | | Transcriptional regulator, AraC family | 0.40 | GFF3357 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.18 | Ac3H11_2533 | | Permease of the drug/metabolite transporter (DMT) superfamily | 0.42 | Ac3H11_1532 | | tRNA pseudouridine synthase A (EC 4.2.1.70) | low | > 79 |
| Dickeya dianthicola ME23 | 0.18 | DZA65_RS20590 | | AraC family transcriptional regulator | 0.49 | DZA65_RS15370 | | tRNA pseudouridine(38-40) synthase TruA | 0.30 | 63 |
| Dickeya dadantii 3937 | 0.18 | DDA3937_RS19370 | | AraC family transcriptional regulator | 0.49 | DDA3937_RS14465 | | tRNA pseudouridine(38-40) synthase TruA | low | > 74 |
| Dickeya dianthicola 67-19 | 0.18 | HGI48_RS19500 | | AraC family transcriptional regulator | 0.49 | HGI48_RS14435 | | tRNA pseudouridine(38-40) synthase TruA | low | > 71 |
| Variovorax sp. SCN45 | 0.17 | GFF1331 | | Transcriptional regulator, AraC family | 0.41 | GFF3885 | | tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) | low | > 127 |
| Serratia liquefaciens MT49 | 0.17 | IAI46_07305 | | AraC family transcriptional regulator | 0.50 | IAI46_17840 | | tRNA pseudouridine(38-40) synthase TruA | low | > 87 |
| Ralstonia sp. UNC404CL21Col | 0.17 | ABZR87_RS18955 | | AraC family transcriptional regulator | 0.38 | ABZR87_RS14510 | | tRNA pseudouridine(38-40) synthase TruA | low | > 80 |
| Azospirillum sp. SherDot2 | 0.16 | MPMX19_05525 | | HTH-type transcriptional regulator VirS | 0.30 | MPMX19_02005 | | tRNA pseudouridine synthase A | — | — |
| Pantoea sp. MT58 | 0.16 | IAI47_14890 | | AraC family transcriptional regulator | 0.49 | IAI47_06245 | | tRNA pseudouridine(38-40) synthase TruA | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.16 | QEN71_RS37015 | | AraC family transcriptional regulator | 0.43 | QEN71_RS17635 | | tRNA pseudouridine(38-40) synthase TruA | low | > 153 |
| Pantoea agglomerans CFBP13505 P0401 | 0.16 | PagCFBP13505_RS10275 | | AraC family transcriptional regulator | 0.49 | PagCFBP13505_RS00200 | | tRNA pseudouridine(38-40) synthase TruA | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.16 | RR42_RS29820 | | AraC family transcriptional regulator | 0.37 | RR42_RS14370 | | tRNA pseudouridine synthase A | — | — |
| Herbaspirillum seropedicae SmR1 | 0.15 | HSERO_RS00045 | | hypothetical protein | 0.41 | HSERO_RS16485 | | tRNA pseudouridine synthase A | low | > 78 |
| Rahnella sp. WP5 | 0.15 | EX31_RS22010 | | AraC family transcriptional regulator | 0.49 | EX31_RS19600 | | tRNA pseudouridine(38-40) synthase TruA | low | > 89 |
| Paraburkholderia graminis OAS925 | 0.15 | ABIE53_005683 | | AraC-like DNA-binding protein | 0.45 | ABIE53_004807 | | tRNA pseudouridine38-40 synthase | low | > 113 |
| Ralstonia solanacearum UW163 | 0.15 | UW163_RS18250 | | AraC family transcriptional regulator | 0.38 | UW163_RS11130 | | tRNA pseudouridine(38-40) synthase TruA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.15 | RALBFv3_RS16895 | | AraC family transcriptional regulator | 0.38 | RALBFv3_RS02595 | | tRNA pseudouridine(38-40) synthase TruA | — | — |
| Rhodospirillum rubrum S1H | 0.14 | Rru_A1029 | | Transcriptional Regulator, AraC family (NCBI) | 0.32 | Rru_A3352 | | Pseudouridylate synthase (NCBI) | — | — |
| Burkholderia phytofirmans PsJN | 0.13 | BPHYT_RS28045 | | AraC family transcriptional regulator | 0.44 | BPHYT_RS33885 | | tRNA pseudouridine synthase A | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.13 | RS_RS20245 | | AraC family transcriptional regulator | 0.39 | RS_RS09975 | | tRNA pseudouridine(38-40) synthase TruA | low | > 80 |
| Variovorax sp. OAS795 | 0.13 | ABID97_RS27050 | | AraC family transcriptional regulator ligand-binding domain-containing protein | 0.39 | ABID97_RS08440 | | tRNA pseudouridine(38-40) synthase TruA | — | — |
| Dechlorosoma suillum PS | 0.13 | Dsui_0320 | | DNA-binding domain-containing protein, AraC-type | 0.45 | Dsui_3194 | | pseudouridylate synthase I | low | > 51 |
| Ralstonia solanacearum PSI07 | 0.12 | RPSI07_RS02345 | | AraC family transcriptional regulator | 0.39 | RPSI07_RS14720 | | tRNA pseudouridine(38-40) synthase TruA | low | > 81 |
| Shewanella sp. ANA-3 | 0.11 | Shewana3_0302 | | AraC family transcriptional regulator (RefSeq) | 0.50 | Shewana3_1479 | truA | tRNA pseudouridine synthase A (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.10 | Shew_2406 | | AraC family transcriptional regulator (RefSeq) | 0.49 | Shew_2306 | | tRNA pseudouridine synthase A (RefSeq) | — | — |
Not shown: 1 genomes with orthologs for Psyr_0324 only; 71 genomes with orthologs for Psyr_1662 only