| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_4754 | | 16S rRNA m(2)G-966 methyltransferase | 1.0 | Psyr_1075 | | amino acid ABC transporter ATP-binding protein, PAAT family | 0.26 | 14 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_4754 | | 16S rRNA m(2)G-966 methyltransferase | 1.00 | Psyr_1075 | | amino acid ABC transporter ATP-binding protein, PAAT family | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.73 | Psest_0255 | | RNA methyltransferase, RsmD family | 0.87 | Psest_3160 | | ABC-type polar amino acid transport system, ATPase component | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.72 | Pf6N2E2_4579 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.94 | Pf6N2E2_5405 | | ABC transporter for D-Alanine, ATPase component (from data) | low | > 103 |
| Pseudomonas sp. S08-1 | 0.72 | OH686_14220 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.88 | OH686_17820 | | Amino acid ABC transporter, ATP-binding protein YhdZ | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.71 | Pf1N1B4_2320 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.94 | Pf1N1B4_914 | | ABC-type polar amino acid transport system, ATPase component | — | — |
| Pseudomonas sp. RS175 | 0.71 | PFR28_04262 | | Ribosomal RNA small subunit methyltransferase D | 0.95 | PFR28_03539 | | Glutamine transport ATP-binding protein GlnQ | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.71 | AO356_13320 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.94 | AO356_17395 | | glutamine ABC transporter ATP-binding protein | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.71 | AO353_08265 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.94 | AO353_04600 | | glutamine ABC transporter ATP-binding protein | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.71 | PFLU_RS28470 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.94 | PFLU_RS04975 | | amino acid ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.71 | PFLU_RS28470 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.94 | PFLU_RS04975 | | amino acid ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.71 | PfGW456L13_990 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.93 | PfGW456L13_1701 | | ABC-type polar amino acid transport system, ATPase component | low | > 87 |
| Pseudomonas simiae WCS417 | 0.70 | PS417_26825 | | 16S rRNA methyltransferase | 0.94 | PS417_04915 | | glutamine ABC transporter ATP-binding protein | — | — |
| Pseudomonas putida KT2440 | 0.68 | PP_5114 | | putative adenine methyltransferase | 0.93 | PP_1300 | | putative amino acid ABC transporter - ATP-binding subunit | low | > 96 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.49 | OHPLBJKB_00238 | | Ribosomal RNA small subunit methyltransferase D | 0.82 | OHPLBJKB_00432 | | Glutamine transport ATP-binding protein GlnQ | low | > 73 |
| Dickeya dadantii 3937 | 0.48 | DDA3937_RS00630 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.81 | DDA3937_RS01255 | | amino acid ABC transporter ATP-binding protein | low | > 74 |
| Rahnella sp. WP5 | 0.48 | EX31_RS14835 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.81 | EX31_RS12140 | | amino acid ABC transporter ATP-binding protein | low | > 89 |
| Dickeya dianthicola 67-19 | 0.48 | HGI48_RS20760 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.80 | HGI48_RS01240 | | amino acid ABC transporter ATP-binding protein | low | > 71 |
| Escherichia fergusonii Becca | 0.48 | EFB2_00351 | | Ribosomal RNA small subunit methyltransferase D | 0.83 | EFB2_00552 | | Glutamine transport ATP-binding protein GlnQ | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.48 | HER17_RS00465 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.81 | HER17_RS20305 | | amino acid ABC transporter ATP-binding protein | low | > 75 |
| Escherichia coli ECOR38 | 0.48 | HEPCGN_15525 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.82 | HEPCGN_16440 | | ABC transporter ATP-binding protein | low | > 87 |
| Escherichia coli ECRC62 | 0.48 | BNILDI_03015 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.83 | BNILDI_02110 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | low | > 75 |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS19815 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.82 | ECOLIN_RS18790 | | amino acid ABC transporter ATP-binding protein | low | > 55 |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_08500 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.82 | NOLOHH_09410 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | low | > 75 |
| Escherichia coli BW25113 | 0.48 | b3465 | yhhF | predicted methyltransferase (NCBI) | 0.82 | b3271 | yhdZ | predicted amino-acid transporter subunit (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.48 | ECD_03314 | | 16S rRNA m(2)G966 methyltransferase, SAM-dependent | 0.82 | ECD_03129 | | putative amino acid ABC transporter ATPase | low | > 61 |
| Escherichia coli ECRC102 | 0.48 | NIAGMN_14465 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.83 | NIAGMN_15380 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | — | — |
| Escherichia coli ECRC100 | 0.48 | OKFHMN_16695 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.83 | OKFHMN_17620 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | low | > 80 |
| Escherichia coli ECRC99 | 0.48 | KEDOAH_11445 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.83 | KEDOAH_10530 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | — | — |
| Dickeya dianthicola ME23 | 0.48 | DZA65_RS21770 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.80 | DZA65_RS01285 | | amino acid ABC transporter ATP-binding protein | low | > 75 |
| Escherichia coli ECRC98 | 0.48 | JDDGAC_20325 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.83 | JDDGAC_21240 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | low | > 86 |
| Escherichia coli ECRC101 | 0.48 | MCAODC_07225 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.83 | MCAODC_08140 | yhdZ | Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ | low | > 87 |
| Marinobacter adhaerens HP15 | 0.46 | HP15_3491 | | conserved hypothetical protein | 0.78 | HP15_2193 | | amino-acid ABC transporter ATP-binding protein-like protein | low | > 73 |
| Erwinia tracheiphila SCR3 | 0.45 | LU632_RS19285 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.81 | LU632_RS19785 | | amino acid ABC transporter ATP-binding protein | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.44 | CSW01_00740 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.78 | CSW01_06840 | | amino acid ABC transporter ATP-binding protein | low | > 62 |
| Pantoea sp. MT58 | 0.44 | IAI47_01535 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.81 | IAI47_02360 | | amino acid ABC transporter ATP-binding protein | low | > 76 |
| Enterobacter sp. TBS_079 | 0.44 | MPMX20_04342 | | Ribosomal RNA small subunit methyltransferase D | 0.83 | MPMX20_04180 | | Glutamine transport ATP-binding protein GlnQ | low | > 85 |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_4299 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.83 | EX28DRAFT_3324 | | ABC-type polar amino acid transport system, ATPase component | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS01665 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.68 | QEN71_RS40280 | | amino acid ABC transporter ATP-binding protein | — | — |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS10145 | | RsmD family RNA methyltransferase | 0.67 | ABCV34_RS08630 | | amino acid ABC transporter ATP-binding protein | low | > 48 |
| Cupriavidus basilensis FW507-4G11 | 0.29 | RR42_RS01990 | | methyltransferase | 0.67 | RR42_RS16370 | | glutamine ABC transporter ATP-binding protein | low | > 128 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.28 | GFF817 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.69 | GFF1640 | | amino acid ABC transporter, ATP-binding protein | — | — |
| Ralstonia solanacearum PSI07 | 0.28 | RPSI07_RS22230 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.57 | RPSI07_RS13330 | | amino acid ABC transporter ATP-binding protein | — | — |
| Ralstonia solanacearum GMI1000 | 0.28 | RS_RS01920 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.58 | RS_RS11345 | | amino acid ABC transporter ATP-binding protein | — | — |
| Ralstonia solanacearum UW163 | 0.28 | UW163_RS02510 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.58 | UW163_RS09770 | | amino acid ABC transporter ATP-binding protein | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.28 | RALBFv3_RS11070 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.58 | RALBFv3_RS03900 | | amino acid ABC transporter ATP-binding protein | low | > 76 |
| Bosea sp. OAE506 | 0.28 | ABIE41_RS23215 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.78 | ABIE41_RS16010 | | amino acid ABC transporter ATP-binding protein | low | > 77 |
| Ralstonia sp. UNC404CL21Col | 0.27 | ABZR87_RS06960 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.59 | ABZR87_RS15830 | | amino acid ABC transporter ATP-binding protein | low | > 80 |
| Phaeobacter inhibens DSM 17395 | 0.25 | PGA1_c29260 | | ribosomal RNA small subunit methyltransferase D | 0.78 | PGA1_c02010 | | glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD | low | > 62 |
| Fusobacterium nucleatum SB010 | 0.24 | HUW76_03595 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.55 | HUW76_06925 | | amino acid ABC transporter ATP-binding protein | low | > 35 |
| Rhodospirillum rubrum S1H | 0.24 | Rru_A0653 | | hypothetical protein (NCBI) | 0.80 | Rru_A1001 | | ABC transporter component (NCBI) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_0115 | | putative methyltransferase (RefSeq) | 0.78 | Dshi_0321 | | ABC transporter related (RefSeq) | low | > 64 |
| Agrobacterium fabrum C58 | 0.23 | Atu0690 | | hypothetical protein | 0.81 | Atu1580 | | ABC transporter, nucleotide binding/ATPase protein (amino acid) | low | > 89 |
| Rhizobium sp. OAE497 | 0.23 | ABIE40_RS03765 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.81 | ABIE40_RS08800 | | amino acid ABC transporter ATP-binding protein | low | > 107 |
| Synechococcus elongatus PCC 7942 | 0.20 | Synpcc7942_1480 | | hypothetical protein | 0.61 | Synpcc7942_0249 | bgtA | ATPase | low | > 38 |
| Bifidobacterium breve UCC2003 | 0.19 | BBR_RS19290 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.57 | BBR_RS17375 | | amino acid ABC transporter ATP-binding protein | low | > 34 |
Not shown: 28 genomes with orthologs for Psyr_4754 only; 10 genomes with orthologs for Psyr_1075 only