Conservation of cofitness between Pf1N1B4_3491 and Pf1N1B4_958 in Pseudomonas fluorescens FW300-N1B4

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_3491 tRNA(Cytosine32)-2-thiocytidine synthetase 1.0 Pf1N1B4_958 Stringent starvation protein B 0.28 6
Pseudomonas fluorescens FW300-N2E3 0.99 AO353_02780 tRNA 2-thiocytidine biosynthesis protein TtcA 0.80 AO353_15265 peptidase low > 101
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_2020 tRNA(Cytosine32)-2-thiocytidine synthetase 0.80 PfGW456L13_1638 Stringent starvation protein B low > 87
Pseudomonas simiae WCS417 0.97 PS417_16415 tRNA 2-thiocytidine biosynthesis protein TtcA 0.82 PS417_04175 peptidase low > 88
Pseudomonas syringae pv. syringae B728a 0.97 Psyr_3705 conserved hypothetical protein 0.76 Psyr_4117 Stringent starvation protein B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.97 Psyr_3705 conserved hypothetical protein 0.76 Psyr_4117 Stringent starvation protein B low > 86
Pseudomonas fluorescens SBW25-INTG 0.97 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.82 PFLU_RS04215 ClpXP protease specificity-enhancing factor low > 109
Pseudomonas fluorescens SBW25 0.97 PFLU_RS18455 tRNA 2-thiocytidine(32) synthetase TtcA 0.82 PFLU_RS04215 ClpXP protease specificity-enhancing factor low > 109
Pseudomonas sp. RS175 0.96 PFR28_03236 tRNA-cytidine(32) 2-sulfurtransferase 0.81 PFR28_03602 Stringent starvation protein B low > 88
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_19000 tRNA 2-thiocytidine biosynthesis protein TtcA 0.82 AO356_17085 peptidase low > 104
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_5711 tRNA(Cytosine32)-2-thiocytidine synthetase 0.82 Pf6N2E2_5341 Stringent starvation protein B low > 103
Pseudomonas putida KT2440 0.92 PP_1641 tRNA 2-thiocytidine biosynthesis protein TtcA 0.72 PP_1321 ClpXP protease specificity-enhancing factor low > 96
Pseudomonas stutzeri RCH2 0.89 Psest_3033 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 0.72 Psest_3275 Stringent starvation protein B low > 67
Pseudomonas sp. S08-1 0.88 OH686_05145 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA 0.78 OH686_08370 Stringent starvation protein B low > 80
Shewanella amazonensis SB2B 0.72 Sama_1801 hypothetical protein (RefSeq) 0.47 Sama_3017 ClpXP protease specificity-enhancing factor (RefSeq) low > 62
Shewanella oneidensis MR-1 0.72 SO2354 conserved hypothetical protein (NCBI ptt file) 0.47 SO0612 sspB stringent starvation protein b (NCBI ptt file) — —
Erwinia tracheiphila SCR3 0.71 LU632_RS12165 ttcA tRNA 2-thiocytidine(32) synthetase TtcA 0.45 LU632_RS21325 sspB ClpXP protease specificity-enhancing factor low > 74
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_07180 tRNA 2-thiocytidine(32) synthetase TtcA 0.48 CSW01_03065 ClpXP protease specificity-enhancing factor low > 62
Alteromonas macleodii MIT1002 0.70 MIT1002_02139 tRNA 2-thiocytidine biosynthesis protein TtcA 0.46 MIT1002_00818 Stringent starvation protein B low > 70
Marinobacter adhaerens HP15 0.70 HP15_2116 PP-loop domain protein 0.53 HP15_549 stringent starvation protein B 0.35 64
Pantoea sp. MT58 0.70 IAI47_09475 tRNA 2-thiocytidine(32) synthetase TtcA 0.46 IAI47_17230 ClpXP protease specificity-enhancing factor low > 76
Klebsiella michiganensis M5al 0.69 BWI76_RS12710 tRNA 2-thiocytidine(32) synthetase TtcA 0.46 BWI76_RS25330 stringent starvation protein B — —
Enterobacter sp. TBS_079 0.69 MPMX20_02440 tRNA-cytidine(32) 2-sulfurtransferase 0.45 MPMX20_04132 Stringent starvation protein B low > 85
Pectobacterium carotovorum WPP14 0.69 HER17_RS09605 tRNA 2-thiocytidine(32) synthetase TtcA 0.48 HER17_RS19930 ClpXP protease specificity-enhancing factor low > 75
Shewanella loihica PV-4 0.69 Shew_1995 PP-loop domain-containing protein (RefSeq) 0.45 Shew_0574 ClpXP protease specificity-enhancing factor (RefSeq) — —
Ralstonia sp. UNC404CL21Col 0.68 ABZR87_RS05700 tRNA 2-thiocytidine(32) synthetase TtcA 0.40 ABZR87_RS02365 ClpXP protease specificity-enhancing factor low > 80
Ralstonia solanacearum GMI1000 0.68 RS_RS00865 tRNA 2-thiocytidine(32) synthetase TtcA 0.40 RS_RS14655 ClpXP protease specificity-enhancing factor low > 80
Ralstonia solanacearum PSI07 0.68 RPSI07_RS23130 tRNA 2-thiocytidine(32) synthetase TtcA 0.39 RPSI07_RS10525 ClpXP protease specificity-enhancing factor low > 81
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS10245 tRNA 2-thiocytidine(32) synthetase TtcA 0.39 RALBFv3_RS06710 ClpXP protease specificity-enhancing factor low > 76
Lysobacter sp. OAE881 0.68 ABIE51_RS01305 tRNA 2-thiocytidine(32) synthetase TtcA 0.44 ABIE51_RS15420 ClpXP protease specificity-enhancing factor low > 62
Ralstonia solanacearum UW163 0.68 UW163_RS03335 tRNA 2-thiocytidine(32) synthetase TtcA 0.39 UW163_RS06905 ClpXP protease specificity-enhancing factor — —
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS01445 tRNA 2-thiocytidine biosynthesis protein TtcA 0.38 RR42_RS18805 peptidase low > 128
Dechlorosoma suillum PS 0.64 Dsui_0695 putative ATPase of the PP-loop superfamily implicated in cell cycle control 0.40 Dsui_1816 stringent starvation protein B low > 51
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS22035 tRNA 2-thiocytidine biosynthesis protein TtcA 0.38 HSERO_RS20225 starvation protein B — —
Castellaniella sp019104865 MT123 0.62 ABCV34_RS10450 tRNA 2-thiocytidine(32) synthetase TtcA 0.37 ABCV34_RS12615 ClpXP protease specificity-enhancing factor low > 48

Not shown: 47 genomes with orthologs for Pf1N1B4_3491 only; 2 genomes with orthologs for Pf1N1B4_958 only