Conservation of cofitness between Pf1N1B4_2728 and Pf1N1B4_2874 in Pseudomonas fluorescens FW300-N1B4

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_2728 ATP-dependent helicase HrpB 1.0 Pf1N1B4_2874 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.26 17
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_1395 ATP-dependent helicase HrpB 0.93 PfGW456L13_1535 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 87
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_5038 ATP-dependent helicase HrpB 0.92 Pf6N2E2_5171 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_15485 ATP-dependent helicase 0.94 AO356_16150 penicillin-binding protein 1B low > 104
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_06300 ATP-dependent helicase 0.94 AO353_14475 penicillin-binding protein 1B low > 101
Pseudomonas sp. RS175 0.91 PFR28_03833 ATP-dependent RNA helicase HrpB 0.93 PFR28_03703 Penicillin-binding protein 1B low > 88
Pseudomonas simiae WCS417 0.89 PS417_24550 ATP-dependent helicase 0.92 PS417_23825 penicillin-binding protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS26480 ATP-dependent helicase HrpB 0.93 PFLU_RS25665 penicillin-binding protein 1B low > 109
Pseudomonas fluorescens SBW25 0.88 PFLU_RS26480 ATP-dependent helicase HrpB 0.93 PFLU_RS25665 penicillin-binding protein 1B low > 109
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4320 ATP-dependent helicase HrpB 0.86 Psyr_0842 Peptidoglycan glycosyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4320 ATP-dependent helicase HrpB 0.86 Psyr_0842 Peptidoglycan glycosyltransferase low > 86
Pseudomonas putida KT2440 0.80 PP_4772 ATP-dependent helicase HrpB 0.88 PP_4683 transglycosylase/transpeptidase low > 96
Pseudomonas stutzeri RCH2 0.79 Psest_0629 ATP-dependent helicase HrpB 0.80 Psest_1032 penicillin-binding protein 1B — —
Pseudomonas sp. S08-1 0.79 OH686_08800 ATP-dependent helicase HrpB 0.81 OH686_08150 penicillin-binding protein 1B low > 80
Marinobacter adhaerens HP15 0.43 HP15_3782 RNA helicase, ATP-dependent DEAH box, HrpB type 0.50 HP15_338 penicillin-binding protein 1B low > 73
Enterobacter asburiae PDN3 0.39 EX28DRAFT_3737 ATP-dependent helicase HrpB 0.34 EX28DRAFT_3738 penicillin-binding protein 1B low > 76
Shewanella oneidensis MR-1 0.38 SO0632 hrpB ATP-dependent helicase HrpB (NCBI ptt file) 0.40 SO0633 mrcB penicillin-binding protein 1B (NCBI ptt file) 0.33 11
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF84 ATP-dependent helicase HrpB 0.34 GFF83 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 78
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.354.1 macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. 0.34 Xcc-8004.1494.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 74
Enterobacter sp. TBS_079 0.38 MPMX20_00834 ATP-dependent RNA helicase HrpB 0.34 MPMX20_00835 Penicillin-binding protein 1B low > 85
Klebsiella michiganensis M5al 0.38 BWI76_RS05030 ATP-dependent helicase 0.35 BWI76_RS05120 bifunctional glycosyl transferase/transpeptidase low > 92
Shewanella sp. ANA-3 0.37 Shewana3_0622 ATP-dependent helicase HrpB (RefSeq) 0.41 Shewana3_0623 penicillin-binding protein 1B (RefSeq) low > 73
Escherichia fergusonii Becca 0.37 EFB2_03896 ATP-dependent RNA helicase HrpB 0.34 EFB2_03895 Penicillin-binding protein 1B low > 86
Escherichia coli ECRC100 0.37 OKFHMN_10330 hrpB ATP-dependent helicase HrpB 0.34 OKFHMN_10325 mrcB bifunctional glycosyl transferase/transpeptidase low > 80
Escherichia coli ECRC102 0.37 NIAGMN_08180 hrpB ATP-dependent helicase HrpB 0.34 NIAGMN_08175 mrcB bifunctional glycosyl transferase/transpeptidase — —
Escherichia coli ECRC98 0.37 JDDGAC_13925 hrpB ATP-dependent helicase HrpB 0.34 JDDGAC_13920 mrcB bifunctional glycosyl transferase/transpeptidase low > 86
Escherichia coli ECOR38 0.37 HEPCGN_08280 hrpB ATP-dependent helicase HrpB 0.34 HEPCGN_08275 mrcB bifunctional glycosyl transferase/transpeptidase low > 87
Escherichia coli ECRC101 0.37 MCAODC_00845 hrpB ATP-dependent helicase HrpB 0.34 MCAODC_00840 mrcB bifunctional glycosyl transferase/transpeptidase low > 87
Escherichia coli BW25113 0.37 b0148 hrpB helicase, ATP-dependent (VIMSS) 0.34 b0149 mrcB penicillin-binding protein 1b (NCBI) low > 76
Escherichia coli Nissle 1917 0.37 ECOLIN_RS00830 ATP-dependent helicase HrpB 0.34 ECOLIN_RS00835 bifunctional glycosyl transferase/transpeptidase low > 55
Escherichia coli ECRC99 0.37 KEDOAH_17825 hrpB ATP-dependent helicase HrpB 0.34 KEDOAH_17830 mrcB bifunctional glycosyl transferase/transpeptidase — —
Escherichia coli ECRC62 0.37 BNILDI_08995 hrpB ATP-dependent helicase HrpB 0.34 BNILDI_09000 mrcB bifunctional glycosyl transferase/transpeptidase low > 75
Escherichia coli BL21 0.37 ECD_00147 putative ATP-dependent helicase 0.34 ECD_00148 fused glycosyl transferase and transpeptidase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_03514 hypothetical protein 0.34 OHPLBJKB_03513 Penicillin-binding protein 1B low > 73
Escherichia coli ECOR27 0.37 NOLOHH_02675 hrpB ATP-dependent helicase HrpB 0.34 NOLOHH_02670 mrcB bifunctional glycosyl transferase/transpeptidase low > 75
Lysobacter sp. OAE881 0.37 ABIE51_RS00675 ATP-dependent helicase HrpB 0.35 ABIE51_RS05185 penicillin-binding protein 1B low > 62
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_16270 hrpA HrpA-like RNA helicase 0.37 OKGIIK_02185 Penicillin-binding protein 1B low > 52
Rhodanobacter denitrificans MT42 0.37 LRK55_RS09655 ATP-dependent helicase HrpB 0.37 LRK55_RS12445 penicillin-binding protein 1B low > 63
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS10015 ATP-dependent helicase HrpB 0.37 LRK54_RS12740 penicillin-binding protein 1B low > 59
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS13060 ATP-dependent helicase HrpB 0.37 ABZR86_RS19740 penicillin-binding protein 1B low > 74
Serratia liquefaciens MT49 0.36 IAI46_21195 ATP-dependent helicase HrpB 0.37 IAI46_21190 bifunctional glycosyl transferase/transpeptidase low > 86
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_03170 ATP-dependent helicase HrpB 0.38 CSW01_03175 penicillin-binding protein 1B low > 62
Shewanella loihica PV-4 0.36 Shew_3124 ATP-dependent helicase HrpB (RefSeq) 0.39 Shew_3123 penicillin-binding protein 1B (RefSeq) 0.51 1
Rahnella sp. WP5 0.36 EX31_RS03235 ATP-dependent helicase HrpB 0.36 EX31_RS03230 bifunctional glycosyl transferase/transpeptidase low > 89
Shewanella amazonensis SB2B 0.34 Sama_2972 ATP-dependent helicase HrpB (RefSeq) 0.39 Sama_2971 peptidoglycan glycosyltransferase (RefSeq) low > 62
Pantoea sp. MT58 0.34 IAI47_15620 ATP-dependent helicase HrpB 0.35 IAI47_15615 bifunctional glycosyl transferase/transpeptidase low > 76
Dickeya dianthicola 67-19 0.33 HGI48_RS16035 ATP-dependent helicase HrpB 0.36 HGI48_RS16030 bifunctional glycosyl transferase/transpeptidase low > 71
Pectobacterium carotovorum WPP14 0.33 HER17_RS05595 ATP-dependent helicase HrpB 0.37 HER17_RS05600 bifunctional glycosyl transferase/transpeptidase low > 75
Dickeya dianthicola ME23 0.32 DZA65_RS17120 ATP-dependent helicase HrpB 0.36 DZA65_RS17115 bifunctional glycosyl transferase/transpeptidase low > 75
Dickeya dadantii 3937 0.32 DDA3937_RS15920 ATP-dependent helicase HrpB 0.36 DDA3937_RS15915 bifunctional glycosyl transferase/transpeptidase low > 74
Alteromonas macleodii MIT1002 0.28 MIT1002_00406 ATP-dependent RNA helicase HrpB 0.39 MIT1002_00409 Murein polymerase low > 70

Not shown: 18 genomes with orthologs for Pf1N1B4_2728 only; 3 genomes with orthologs for Pf1N1B4_2874 only