Conservation of cofitness between Pf1N1B4_2147 and Pf1N1B4_1734 in Pseudomonas fluorescens FW300-N1B4

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_2147 Putrescine utilization regulator 1.0 Pf1N1B4_1734 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.50 2
Pseudomonas fluorescens SBW25 0.99 PFLU_RS29365 cupin domain-containing protein 0.95 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS29365 cupin domain-containing protein 0.95 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase 0.23 12
Pseudomonas simiae WCS417 0.99 PS417_27690 XRE family transcriptional regulator 0.96 PS417_00895 succinate-semialdehyde dehydrogenase 0.31 1
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_09140 XRE family transcriptional regulator 0.96 AO353_11505 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) low > 101
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_12635 XRE family transcriptional regulator 0.96 AO356_10720 succinate-semialdehyde dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_4394 Putrescine utilization regulator 0.96 Pf6N2E2_4014 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.37 9
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_815 Putrescine utilization regulator 0.98 PfGW456L13_495 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (from data) low > 87
Pseudomonas sp. RS175 0.97 PFR28_04396 HTH-type transcriptional regulator PuuR 0.96 PFR28_04755 Glutarate-semialdehyde dehydrogenase low > 88
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_0238 Helix-turn-helix motif protein 0.91 Psyr_0091 succinate semialdehyde dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_0238 Helix-turn-helix motif protein 0.91 Psyr_0091 succinate semialdehyde dehydrogenase low > 86
Pseudomonas putida KT2440 0.89 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine 0.91 PP_0213 succinate-semialdehyde dehydrogenase (NADP+) low > 96
Pseudomonas sp. S08-1 0.83 OH686_13700 Putrescine utilization regulator 0.89 OH686_11875 Succinate-semialdehyde dehydrogenase [NAD(P)+] — —
Pseudomonas stutzeri RCH2 0.83 Psest_3791 Predicted transcriptional regulators 0.85 Psest_4237 succinate-semialdehyde dehydrogenase low > 67
Shewanella oneidensis MR-1 0.71 SO1265 transcriptional regulator, putative (NCBI ptt file) 0.72 SO1275 gabD succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] (from data) 0.56 13
Shewanella loihica PV-4 0.70 Shew_0970 XRE family transcriptional regulator (RefSeq) 0.58 Shew_3173 succinic semialdehyde dehydrogenase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.70 Sama_2646 XRE family transcriptional regulator (RefSeq) 0.71 Sama_2637 succinate-semialdehyde dehydrogenase (NAD(P)(+)) (RefSeq) 0.64 3
Shewanella sp. ANA-3 0.70 Shewana3_3100 XRE family transcriptional regulator (RefSeq) 0.72 Shewana3_3092 succinate semialdehyde dehydrogenase (RefSeq) low > 73
Rhodospirillum rubrum S1H 0.53 Rru_A2042 Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) 0.62 Rru_A0134 Succinic semialdehyde dehydrogenase (NCBI) low > 58
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS23170 XRE family transcriptional regulator 0.67 BPHYT_RS22430 succinate-semialdehyde dehydrogenase low > 109
Sinorhizobium meliloti 1021 0.48 SMc04387 aldehyde dehydrogenase 0.74 SMc02780 succinate-semialdehyde dehydrogenase [NADP+] protein 0.23 41
Azospirillum sp. SherDot2 0.48 MPMX19_04921 HTH-type transcriptional regulator PuuR 0.65 MPMX19_04920 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD low > 112
Bosea sp. OAE506 0.47 ABIE41_RS05345 cupin domain-containing protein 0.61 ABIE41_RS20985 NAD-dependent succinate-semialdehyde dehydrogenase low > 77
Agrobacterium fabrum C58 0.47 Atu3328 aldehyde dehydrogenase 0.68 Atu4247 aldehyde dehydrogenase low > 89
Escherichia coli BL21 0.37 ECD_01276 repressor for the divergent puu operons, putrescine inducible 0.84 ECD_02517 succinate-semialdehyde dehydrogenase I, NADP-dependent low > 61
Escherichia coli ECRC98 0.37 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR 0.83 JDDGAC_24575 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 86
Escherichia coli ECRC100 0.37 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR 0.83 OKFHMN_20915 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 80
Escherichia coli BW25113 0.37 b1299 puuR DNA-binding transcriptional repressor (NCBI) 0.83 b2661 gabD succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI) low > 76
Enterobacter asburiae PDN3 0.37 EX28DRAFT_1500 Predicted transcriptional regulators 0.57 EX28DRAFT_3290 succinate-semialdehyde dehydrogenase low > 76
Rahnella sp. WP5 0.37 EX31_RS17905 HTH-type transcriptional regulator PuuR 0.56 EX31_RS12300 NAD-dependent succinate-semialdehyde dehydrogenase low > 89
Escherichia coli ECRC99 0.37 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR 0.83 KEDOAH_07225 gabD NADP-dependent succinate-semialdehyde dehydrogenase — —
Escherichia coli ECRC102 0.37 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR 0.83 NIAGMN_18680 gabD NADP-dependent succinate-semialdehyde dehydrogenase — —
Escherichia coli ECOR38 0.37 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR 0.84 HEPCGN_20150 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_02383 HTH-type transcriptional regulator PuuR 0.84 OHPLBJKB_01071 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD low > 73
Escherichia coli ECOR27 0.37 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR 0.83 NOLOHH_12740 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 75
Escherichia coli ECRC101 0.37 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR 0.83 MCAODC_11435 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC62 0.37 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR 0.84 BNILDI_11300 gabD NADP-dependent succinate-semialdehyde dehydrogenase low > 75
Serratia liquefaciens MT49 0.37 IAI46_17165 HTH-type transcriptional regulator PuuR 0.68 IAI46_16465 NADP-dependent succinate-semialdehyde dehydrogenase low > 86
Klebsiella michiganensis M5al 0.37 BWI76_RS10700 XRE family transcriptional regulator 0.83 BWI76_RS05620 NAD-dependent succinate-semialdehyde dehydrogenase low > 92
Cupriavidus basilensis FW507-4G11 0.22 RR42_RS00225 XRE family transcriptional regulator 0.73 RR42_RS21760 succinate-semialdehyde dehydrogenase low > 128
Acidovorax sp. GW101-3H11 0.21 Ac3H11_1308 Transcriptional regulator 0.67 Ac3H11_1480 Aldehyde dehydrogenase B (EC 1.2.1.22) — —
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU3066 DNA-binding protein (TIGR) 0.21 DVU3294 areC aldehyde dehydrogenase (NADP) family protein (TIGR) low > 55
Paraburkholderia bryophila 376MFSha3.1 0.19 H281DRAFT_03130 transcriptional regulator, XRE family with cupin sensor 0.68 H281DRAFT_02680 succinate semialdehyde dehydrogenase low > 103
Ralstonia solanacearum PSI07 0.18 RPSI07_RS22920 helix-turn-helix domain-containing protein 0.68 RPSI07_RS20435 NAD-dependent succinate-semialdehyde dehydrogenase low > 81
Paraburkholderia graminis OAS925 0.18 ABIE53_004168 transcriptional regulator with XRE-family HTH domain 0.67 ABIE53_005621 succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase low > 113
Phaeobacter inhibens DSM 17395 0.18 PGA1_c28440 putative transcriptional regulator 0.64 PGA1_c29650 succinate-semialdehyde dehdyrogenase GabD low > 62
Variovorax sp. OAS795 0.16 ABID97_RS13245 XRE family transcriptional regulator 0.66 ABID97_RS11235 NAD-dependent succinate-semialdehyde dehydrogenase low > 91
Castellaniella sp019104865 MT123 0.14 ABCV34_RS09100 XRE family transcriptional regulator 0.70 ABCV34_RS09380 NADP-dependent succinate-semialdehyde dehydrogenase low > 48

Not shown: 9 genomes with orthologs for Pf1N1B4_2147 only; 30 genomes with orthologs for Pf1N1B4_1734 only