Conservation of cofitness between PP_4897 and PP_5057 in Pseudomonas putida KT2440

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4897 N-acetylmuramoyl-L-alanine amidase 1.0 PP_5057 Peptidase, M23/M37 family 0.28 5
Pseudomonas sp. RS175 0.81 PFR28_05118 N-acetylmuramoyl-L-alanine amidase AmiC 0.76 PFR28_04937 Murein hydrolase activator EnvC 0.40 5
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_08670 N-acetylmuramoyl-L-alanine amidase 0.75 AO356_09775 peptidase M23 0.56 5
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_0569 N-acetylmuramoyl-L-alanine amidase 0.71 Psyr_4886 Peptidase M23B 0.36 75
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_0569 N-acetylmuramoyl-L-alanine amidase 0.71 Psyr_4886 Peptidase M23B 0.34 15
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_157 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.70 PfGW456L13_354 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP 0.45 1
Pseudomonas fluorescens SBW25-INTG 0.79 PFLU_RS02555 AMIN domain-containing protein 0.76 PFLU_RS01650 murein hydrolase activator EnvC low > 109
Pseudomonas fluorescens SBW25 0.79 PFLU_RS02555 AMIN domain-containing protein 0.76 PFLU_RS01650 murein hydrolase activator EnvC low > 109
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_3617 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.76 Pf6N2E2_3834 Lipoprotein NlpD 0.70 4
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_1415 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.76 Pf1N1B4_1618 Lipoprotein NlpD — —
Pseudomonas simiae WCS417 0.78 PS417_02475 N-acetylmuramoyl-L-alanine amidase 0.76 PS417_01600 peptidase M23 0.29 30
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_13130 N-acetylmuramoyl-L-alanine amidase 0.76 AO353_12110 peptidase M23 0.37 8
Pseudomonas stutzeri RCH2 0.70 Psest_0680 N-acetylmuramoyl-L-alanine amidase 0.63 Psest_0161 Membrane-bound metallopeptidase — —
Pseudomonas sp. S08-1 0.69 OH686_09485 N-acetylmuramoyl-L-alanine amidase 0.64 OH686_14650 Murein hydrolase activator EnvC low > 80
Marinobacter adhaerens HP15 0.48 HP15_2502 N-acetylmuramoyl-L-alanine amidase-like protein 0.23 HP15_3006 peptidase M23B low > 73
Shewanella oneidensis MR-1 0.38 SO0600 amiB N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) 0.24 SO0048 peptidase, M23/M37 family (NCBI ptt file) 0.72 2
Shewanella loihica PV-4 0.37 Shew_0563 N-acetylmuramoyl-L-alanine amidase (RefSeq) 0.25 Shew_3807 peptidase M23B (RefSeq) — —
Shewanella amazonensis SB2B 0.37 Sama_3028 N-acetylmuramoyl-L-alanine amidase (RefSeq) 0.24 Sama_0059 M24/M37 family peptidase (RefSeq) — —
Shewanella sp. ANA-3 0.37 Shewana3_0594 cell wall hydrolase/autolysin (RefSeq) 0.25 Shewana3_0050 peptidase M23B (RefSeq) — —
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_1949 N-acetylmuramoyl-L-alanine amidase 0.24 B158DRAFT_0705 Membrane-bound metallopeptidase 0.95 3
Alteromonas macleodii MIT1002 0.36 MIT1002_03791 N-acetylmuramoyl-L-alanine amidase AmiB precursor 0.21 MIT1002_00489 Septal ring factor 0.84 38
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS04210 N-acetylmuramoyl-L-alanine amidase 0.24 HSERO_RS00825 protease — —
Dechlorosoma suillum PS 0.33 Dsui_3500 N-acetylmuramoyl-L-alanine amidase 0.23 Dsui_1271 membrane-bound metallopeptidase — —
Castellaniella sp019104865 MT123 0.32 ABCV34_RS08775 N-acetylmuramoyl-L-alanine amidase 0.19 ABCV34_RS14275 peptidoglycan DD-metalloendopeptidase family protein — —
Pectobacterium carotovorum WPP14 0.32 HER17_RS16500 N-acetylmuramoyl-L-alanine amidase AmiC 0.21 HER17_RS20750 murein hydrolase activator EnvC low > 75
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_03915 N-acetylmuramoyl-L-alanine amidase 0.14 OKGIIK_12915 Peptidase M23 — —
Dickeya dadantii 3937 0.31 DDA3937_RS04995 N-acetylmuramoyl-L-alanine amidase 0.20 DDA3937_RS20420 murein hydrolase activator EnvC low > 74
Dickeya dianthicola 67-19 0.31 HGI48_RS18560 N-acetylmuramoyl-L-alanine amidase AmiB 0.21 HGI48_RS00780 murein hydrolase activator EnvC low > 71
Dickeya dianthicola ME23 0.31 DZA65_RS19695 N-acetylmuramoyl-L-alanine amidase AmiB 0.20 DZA65_RS00835 murein hydrolase activator EnvC 0.65 2
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS15145 N-acetylmuramoyl-L-alanine amidase 0.16 LRK54_RS10955 peptidoglycan DD-metalloendopeptidase family protein — —
Rhodanobacter denitrificans MT42 0.31 LRK55_RS14860 N-acetylmuramoyl-L-alanine amidase 0.16 LRK55_RS10660 peptidoglycan DD-metalloendopeptidase family protein — —
Serratia liquefaciens MT49 0.31 IAI46_20390 N-acetylmuramoyl-L-alanine amidase 0.19 IAI46_24715 murein hydrolase activator EnvC 0.54 4
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF1298 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.20 GFF397 Periplasmic septal ring factor with murein hydrolase activity EnvC/YibP — —
Enterobacter sp. TBS_079 0.30 MPMX20_03680 N-acetylmuramoyl-L-alanine amidase AmiC 0.19 MPMX20_00120 Murein hydrolase activator EnvC low > 85
Pantoea sp. MT58 0.30 IAI47_02575 N-acetylmuramoyl-L-alanine amidase AmiB 0.18 IAI47_00720 murein hydrolase activator EnvC low > 76
Enterobacter asburiae PDN3 0.30 EX28DRAFT_2892 N-acetylmuramoyl-L-alanine amidase 0.19 EX28DRAFT_3864 Membrane-bound metallopeptidase 0.58 73
Escherichia coli ECOR27 0.30 NOLOHH_11950 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.20 NOLOHH_07610 envC murein hydrolase activator EnvC low > 57
Escherichia coli ECRC99 0.30 KEDOAH_08065 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.20 KEDOAH_12420 envC murein hydrolase activator EnvC — —
Escherichia coli ECRC62 0.30 BNILDI_10430 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.20 BNILDI_03905 envC murein hydrolase activator EnvC — —
Escherichia coli Nissle 1917 0.30 ECOLIN_RS15815 N-acetylmuramoyl-L-alanine amidase AmiC 0.20 ECOLIN_RS20620 murein hydrolase activator EnvC low > 52
Escherichia coli ECRC98 0.30 JDDGAC_23730 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.20 JDDGAC_19355 envC murein hydrolase activator EnvC — —
Escherichia coli ECRC101 0.30 OKFHMN_20065 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.20 OKFHMN_15730 envC murein hydrolase activator EnvC — —
Escherichia fergusonii Becca 0.30 EFB2_01067 N-acetylmuramoyl-L-alanine amidase AmiC 0.20 EFB2_00197 Murein hydrolase activator EnvC low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_00913 N-acetylmuramoyl-L-alanine amidase AmiC 0.20 OHPLBJKB_00086 Murein hydrolase activator EnvC low > 73
Escherichia coli ECRC101 0.30 MCAODC_10590 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.20 MCAODC_06240 envC murein hydrolase activator EnvC — —
Escherichia coli ECRC102 0.30 NIAGMN_17835 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.20 NIAGMN_13490 envC murein hydrolase activator EnvC — —
Escherichia coli BW25113 0.30 b2817 b2817 putative amidase (VIMSS) 0.20 b3613 yibP putative membrane protein (VIMSS) low > 76
Erwinia tracheiphila SCR3 0.30 LU632_RS06215 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.19 LU632_RS21895 envC murein hydrolase activator EnvC low > 74
Escherichia coli BL21 0.30 ECD_02665 N-acetylmuramoyl-L-alanine amidase 0.20 ECD_03471 activator of AmiB,C murein hydrolases, septal ring factor — —
Escherichia coli ECOR38 0.30 HEPCGN_19320 amiC N-acetylmuramoyl-L-alanine amidase AmiC 0.20 HEPCGN_14570 envC murein hydrolase activator EnvC low > 85
Klebsiella michiganensis M5al 0.29 BWI76_RS23215 N-acetylmuramoyl-L-alanine amidase 0.19 BWI76_RS27235 murein hydrolase activator EnvC 0.19 27
Rahnella sp. WP5 0.28 EX31_RS08835 N-acetylmuramoyl-L-alanine amidase AmiB 0.21 EX31_RS14365 murein hydrolase activator EnvC low > 89
Xanthomonas campestris pv. campestris strain 8004 0.26 Xcc-8004.3058.1 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) 0.18 Xcc-8004.29.1 Cell wall endopeptidase, family M23/M37 low > 74

Not shown: 10 genomes with orthologs for PP_4897 only; 11 genomes with orthologs for PP_5057 only