Conservation of cofitness between PP_4694 and PP_3417 in Pseudomonas putida KT2440

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4694 Glutamyl-Q tRNA(Asp) synthetase 1.0 PP_3417 D-gluconate transporter 0.23 16
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_5159 glutamyl-Q-tRNA synthetase 0.75 Pf6N2E2_2863 Gluconate permease low > 103
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_1527 glutamyl-Q-tRNA synthetase 0.74 PfGW456L13_1927 Gluconate permease low > 87
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_16090 glutamyl-Q tRNA(Asp) ligase 0.75 AO356_05055 permease DsdX low > 104
Pseudomonas simiae WCS417 0.71 PS417_23880 glutamyl-Q tRNA(Asp) ligase 0.77 PS417_21980 permease DsdX low > 88
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_2861 glutamyl-Q-tRNA synthetase 0.74 Pf1N1B4_556 Gluconate permease low > 87
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_14415 glutamyl-Q tRNA(Asp) ligase 0.75 AO353_03245 permease DsdX low > 101
Pseudomonas fluorescens SBW25 0.70 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.77 PFLU_RS23585 GntP family permease low > 109
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS 0.77 PFLU_RS23585 GntP family permease low > 109
Pseudomonas sp. RS175 0.69 PFR28_03715 Glutamyl-Q tRNA(Asp) synthetase 0.75 PFR28_00595 High-affinity gluconate transporter low > 88
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.83 Psyr_3338 gluconate permease GntT low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_0834 Glutamyl-tRNA synthetase, class Ic 0.83 Psyr_3338 gluconate permease GntT low > 86
Escherichia coli BW25113 0.48 b0144 yadB glutamyl-Q tRNA(Asp) synthetase (RefSeq) 0.44 b3415 gntT gluconate transporter, high-affinity GNT I system (NCBI) low > 76
Escherichia coli ECOR27 0.48 NOLOHH_02695 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.44 NOLOHH_08770 gntT gluconate transporter low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_03518 Glutamyl-Q tRNA(Asp) synthetase 0.44 OHPLBJKB_00288 High-affinity gluconate transporter low > 73
Escherichia coli BL21 0.48 ECD_00143 glutamyl-Q tRNA(Asp) synthetase 0.44 ECD_03267 gluconate transporter, high-affinity GNT I system low > 61
Escherichia coli ECRC62 0.47 BNILDI_08975 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.44 BNILDI_02745 gntT gluconate transporter low > 75
Escherichia coli ECRC101 0.47 MCAODC_00865 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.44 MCAODC_07515 gntT gluconate transporter low > 87
Escherichia coli ECRC100 0.47 OKFHMN_10350 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.44 OKFHMN_16985 gntT gluconate transporter low > 80
Escherichia coli ECRC98 0.47 JDDGAC_13945 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.44 JDDGAC_20615 gntT gluconate transporter low > 86
Escherichia coli ECRC102 0.47 NIAGMN_08200 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.44 NIAGMN_14755 gntT gluconate transporter — —
Escherichia coli ECRC99 0.47 KEDOAH_17805 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.44 KEDOAH_11155 gntT gluconate transporter — —
Escherichia fergusonii Becca 0.47 EFB2_03900 Glutamyl-Q tRNA(Asp) synthetase 0.44 EFB2_00413 High-affinity gluconate transporter low > 86
Escherichia coli ECOR38 0.47 HEPCGN_08300 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.44 HEPCGN_15795 gntT gluconate transporter low > 87
Escherichia coli Nissle 1917 0.46 ECOLIN_RS00795 tRNA glutamyl-Q(34) synthetase GluQRS 0.44 ECOLIN_RS19505 gluconate transporter low > 55
Enterobacter sp. TBS_079 0.45 MPMX20_00830 Glutamyl-Q tRNA(Asp) synthetase 0.46 MPMX20_04302 High-affinity gluconate transporter low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF88 glutamyl-Q-tRNA synthetase 0.44 GFF602 High-affinity gluconate transporter GntT low > 78
Klebsiella michiganensis M5al 0.45 BWI76_RS05010 tRNA glutamyl-Q synthetase 0.43 BWI76_RS26615 gluconate:H+ symporter (from data) low > 92
Serratia liquefaciens MT49 0.45 IAI46_21215 tRNA glutamyl-Q(34) synthetase GluQRS 0.44 IAI46_23960 gluconate transporter low > 86
Rahnella sp. WP5 0.44 EX31_RS03255 tRNA glutamyl-Q(34) synthetase GluQRS 0.42 EX31_RS05050 gluconate transporter low > 89
Enterobacter asburiae PDN3 0.44 EX28DRAFT_3733 glutamyl-queuosine tRNA(Asp) synthetase 0.45 EX28DRAFT_4127 gluconate transporter low > 76
Pectobacterium carotovorum WPP14 0.43 HER17_RS05575 tRNA glutamyl-Q(34) synthetase GluQRS 0.28 HER17_RS00545 GntP family transporter low > 75
Erwinia tracheiphila SCR3 0.42 LU632_RS20085 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS 0.35 LU632_RS19170 gntU gluconate transporter low > 74
Pantoea sp. MT58 0.42 IAI47_15640 tRNA glutamyl-Q(34) synthetase GluQRS 0.45 IAI47_14085 gluconate transporter low > 76
Shewanella oneidensis MR-1 0.42 SO0873 glutamyl-tRNA synthetase domain protein (NCBI ptt file) 0.22 SO1771 permease, GntP family (NCBI ptt file) low > 76
Dickeya dianthicola 67-19 0.42 HGI48_RS16055 tRNA glutamyl-Q(34) synthetase GluQRS 0.45 HGI48_RS19890 gluconate transporter low > 71
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS00575 tRNA glutamyl-Q(34) synthetase GluQRS 0.47 ABZR86_RS12640 gluconate:H+ symporter low > 74
Dickeya dianthicola ME23 0.41 DZA65_RS17140 tRNA glutamyl-Q(34) synthetase GluQRS 0.45 DZA65_RS20960 gluconate transporter low > 75
Shewanella sp. ANA-3 0.41 Shewana3_3405 glutamyl-tRNA synthetase, class Ic (RefSeq) 0.21 Shewana3_2684 gluconate transporter (RefSeq) low > 73
Dickeya dadantii 3937 0.40 DDA3937_RS15940 tRNA glutamyl-Q(34) synthetase GluQRS 0.44 DDA3937_RS19775 gluconate transporter low > 74
Shewanella loihica PV-4 0.40 Shew_3130 glutamate--tRNA ligase (RefSeq) 0.23 Shew_2533 gluconate transporter (RefSeq) low > 60
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS06160 glutamyl-Q tRNA(Asp) ligase 0.53 BPHYT_RS13375 permease — —
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_00309 glutamyl-Q tRNA(Asp) synthetase 0.52 H281DRAFT_04276 gluconate permease GntT low > 103
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS24480 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 QEN71_RS26910 GntP family permease low > 153
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_03150 tRNA glutamyl-Q(34) synthetase GluQRS 0.25 CSW01_01470 permease low > 62
Paraburkholderia graminis OAS925 0.39 ABIE53_001439 glutamyl-Q tRNA(Asp) synthetase 0.52 ABIE53_003515 GntP family gluconate:H+ symporter low > 113
Alteromonas macleodii MIT1002 0.39 MIT1002_03691 Glutamyl-Q tRNA(Asp) synthetase 0.38 MIT1002_03473 5-keto-D-gluconate transporter low > 70
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS15535 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 ABZR87_RS19095 gluconate:H+ symporter low > 80
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS17850 glutamyl-Q tRNA(Asp) ligase 0.72 HSERO_RS05470 permease low > 78
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS03645 tRNA glutamyl-Q(34) synthetase GluQRS 0.52 RALBFv3_RS18165 permease low > 76
Ralstonia solanacearum UW163 0.37 UW163_RS10025 tRNA glutamyl-Q(34) synthetase GluQRS 0.52 UW163_RS20965 permease — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS13585 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 RPSI07_RS05470 permease low > 81
Ralstonia solanacearum GMI1000 0.35 RS_RS11090 tRNA glutamyl-Q(34) synthetase GluQRS 0.53 RS_RS22870 permease low > 80

Not shown: 20 genomes with orthologs for PP_4694 only; 8 genomes with orthologs for PP_3417 only