Conservation of cofitness between PP_4726 and PP_2096 in Pseudomonas putida KT2440

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4726 Chaperone protein DnaJ 1.0 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase 0.50 14
Pseudomonas fluorescens SBW25 0.85 PFLU_RS25895 molecular chaperone DnaJ 0.82 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS25895 molecular chaperone DnaJ 0.82 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_4194 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal 0.83 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_4194 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal 0.83 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas simiae WCS417 0.84 PS417_24055 molecular chaperone DnaJ 0.82 PS417_20930 50S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_05645 molecular chaperone DnaJ 0.83 AO353_00775 50S rRNA methyltransferase — —
Pseudomonas sp. S08-1 0.84 OH686_17065 chaperone protein DnaJ 0.81 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase low > 80
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_3367 Chaperone protein DnaJ 0.82 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) — —
Pseudomonas sp. RS175 0.83 PFR28_00074 Chaperone protein DnaJ 0.83 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L low > 88
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_07495 molecular chaperone DnaJ 0.83 AO356_02605 50S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_1175 Chaperone protein DnaJ 0.83 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) — —
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_5102 Chaperone protein DnaJ 0.83 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) — —
Pseudomonas stutzeri RCH2 0.81 Psest_0965 chaperone protein DnaJ 0.81 Psest_1949 Predicted N6-adenine-specific DNA methylase — —
Alteromonas macleodii MIT1002 0.69 MIT1002_01458 Heat shock protein J 0.38 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L — —
Shewanella oneidensis MR-1 0.67 SO1127 dnaJ chaperone protein DnaJ (NCBI ptt file) 0.40 SO1851 conserved hypothetical protein (NCBI ptt file) — —
Dickeya dianthicola ME23 0.67 DZA65_RS19440 molecular chaperone DnaJ 0.40 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECOR27 0.67 NOLOHH_03375 dnaJ molecular chaperone DnaJ 0.40 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC101 0.67 MCAODC_01560 dnaJ molecular chaperone DnaJ 0.40 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC62 0.67 BNILDI_08230 dnaJ molecular chaperone DnaJ 0.40 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC101 0.67 OKFHMN_11045 dnaJ molecular chaperone DnaJ 0.40 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli BL21 0.67 ECD_00015 chaperone Hsp40, DnaK co-chaperone 0.40 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent low > 60
Escherichia coli ECRC98 0.67 JDDGAC_14640 dnaJ molecular chaperone DnaJ 0.40 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECOR38 0.67 HEPCGN_09045 dnaJ molecular chaperone DnaJ 0.40 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC102 0.67 NIAGMN_08895 dnaJ molecular chaperone DnaJ 0.40 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC99 0.67 KEDOAH_17110 dnaJ molecular chaperone DnaJ 0.40 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli BW25113 0.67 b0015 dnaJ chaperone Hsp40, co-chaperone with DnaK (NCBI) 0.40 b0948 ycbY predicted methyltransferase (NCBI) 0.28 33
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_03646 Chaperone protein DnaJ 0.40 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L — —
Escherichia fergusonii Becca 0.67 EFB2_04029 Chaperone protein DnaJ 0.40 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L low > 86
Escherichia coli Nissle 1917 0.67 ECOLIN_RS00080 molecular chaperone DnaJ 0.40 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Erwinia tracheiphila SCR3 0.67 LU632_RS02660 dnaJ molecular chaperone DnaJ 0.40 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Shewanella sp. ANA-3 0.66 Shewana3_0960 chaperone protein DnaJ (RefSeq) 0.40 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) — —
Klebsiella michiganensis M5al 0.66 BWI76_RS04305 molecular chaperone DnaJ 0.40 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase low > 92
Dickeya dianthicola 67-19 0.66 HGI48_RS18300 molecular chaperone DnaJ 0.40 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF1090 Chaperone protein DnaJ 0.40 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 78
Marinobacter adhaerens HP15 0.66 HP15_3080 chaperone protein dnaJ 0.47 HP15_1379 RNA methylase — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3627 chaperone protein DnaJ 0.41 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase — —
Dickeya dadantii 3937 0.66 DDA3937_RS18365 molecular chaperone DnaJ 0.40 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Shewanella loihica PV-4 0.66 Shew_2843 chaperone protein DnaJ (RefSeq) 0.40 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) — —
Enterobacter sp. TBS_079 0.66 MPMX20_00721 Chaperone protein DnaJ 0.41 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L low > 85
Serratia liquefaciens MT49 0.66 IAI46_03080 molecular chaperone DnaJ 0.39 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 86
Pantoea sp. MT58 0.66 IAI47_16170 molecular chaperone DnaJ 0.39 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Shewanella amazonensis SB2B 0.66 Sama_2510 chaperone protein DnaJ (RefSeq) 0.41 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) — —
Pectobacterium carotovorum WPP14 0.65 HER17_RS02845 molecular chaperone DnaJ 0.40 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Rahnella sp. WP5 0.63 EX31_RS03895 molecular chaperone DnaJ 0.38 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_0609 chaperone protein DnaJ 0.41 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) low > 40
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_04415 molecular chaperone DnaJ 0.41 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L — —
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS17980 molecular chaperone DnaJ 0.43 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 59
Rhodanobacter denitrificans MT42 0.59 LRK55_RS17835 molecular chaperone DnaJ 0.43 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 63
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_07320 dnaJ molecular chaperone DnaJ 0.42 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 52
Lysobacter sp. OAE881 0.56 ABIE51_RS11635 molecular chaperone DnaJ 0.39 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 62
Acinetobacter radioresistens SK82 0.55 MPMX26_03008 Chaperone protein DnaJ 0.38 MPMX26_01097 Ribosomal RNA large subunit methyltransferase K/L 0.62 3
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.3426.1 Chaperone protein DnaJ 0.40 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 74
Dyella japonica UNC79MFTsu3.2 0.54 ABZR86_RS05645 molecular chaperone DnaJ 0.45 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74

Not shown: 48 genomes with orthologs for PP_4726 only; 0 genomes with orthologs for PP_2096 only