Conservation of cofitness between PP_1909 and PP_2096 in Pseudomonas putida KT2440

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1909 putative septum formation protein 1.0 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase 0.41 14
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_5947 FIG146278: Maf/YceF/YhdE family protein 0.82 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_456 FIG146278: Maf/YceF/YhdE family protein 0.83 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas simiae WCS417 0.69 PS417_21465 septum formation inhibitor Maf 0.82 PS417_20930 50S rRNA methyltransferase 0.22 6
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_2100 FIG146278: Maf/YceF/YhdE family protein 0.83 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_01390 septum formation inhibitor Maf 0.83 AO353_00775 50S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_20140 septum formation inhibitor Maf 0.83 AO356_02605 50S rRNA methyltransferase low > 104
Pseudomonas fluorescens SBW25 0.69 PFLU_RS23080 septum formation inhibitor Maf 0.82 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS23080 septum formation inhibitor Maf 0.82 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas sp. RS175 0.69 PFR28_03015 7-methyl-GTP pyrophosphatase 0.83 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L low > 88
Pseudomonas sp. S08-1 0.65 OH686_22110 septum formation protein Maf 0.81 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase low > 80
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_1642 Maf-like protein 0.83 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_1642 Maf-like protein 0.83 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas stutzeri RCH2 0.57 Psest_1683 MAF protein 0.81 Psest_1949 Predicted N6-adenine-specific DNA methylase low > 67
Serratia liquefaciens MT49 0.49 IAI46_09760 septum formation inhibitor Maf 0.39 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 86
Enterobacter sp. TBS_079 0.49 MPMX20_01767 7-methyl-GTP pyrophosphatase 0.41 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L low > 85
Pectobacterium carotovorum WPP14 0.48 HER17_RS08620 Maf-like protein 0.40 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_10125 maf-like protein 0.41 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF3369 FIG146278: Maf/YceF/YhdE family protein 0.40 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 78
Marinobacter adhaerens HP15 0.47 HP15_2218 Maf-like protein 0.47 HP15_1379 RNA methylase low > 73
Escherichia coli ECRC62 0.46 BNILDI_19300 yceF 7-methyl-GTP pyrophosphatase 0.40 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECOR27 0.46 NOLOHH_21140 yceF 7-methyl-GTP pyrophosphatase 0.40 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 57
Escherichia fergusonii Becca 0.46 EFB2_02888 7-methyl-GTP pyrophosphatase 0.40 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L low > 86
Escherichia coli ECRC102 0.46 NIAGMN_24220 yceF 7-methyl-GTP pyrophosphatase 0.40 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC101 0.46 OKFHMN_03610 yceF 7-methyl-GTP pyrophosphatase 0.40 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC99 0.46 KEDOAH_24145 yceF 7-methyl-GTP pyrophosphatase 0.40 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Enterobacter asburiae PDN3 0.46 EX28DRAFT_1843 MAF protein 0.41 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase low > 76
Escherichia coli ECOR38 0.46 HEPCGN_23870 yceF 7-methyl-GTP pyrophosphatase 0.40 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_02579 Maf-like protein YceF 0.40 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L low > 73
Escherichia coli ECRC101 0.46 MCAODC_22970 yceF 7-methyl-GTP pyrophosphatase 0.40 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC98 0.46 JDDGAC_07270 yceF 7-methyl-GTP pyrophosphatase 0.40 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Erwinia tracheiphila SCR3 0.45 LU632_RS14850 Maf-like protein 0.40 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Dickeya dadantii 3937 0.45 DDA3937_RS13150 septum formation inhibitor Maf 0.40 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Escherichia coli BL21 0.45 ECD_01083 m(7)GTP pyrophosphatase 0.40 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent low > 60
Escherichia coli BW25113 0.45 b1087 yceF orf, hypothetical protein (VIMSS) 0.40 b0948 ycbY predicted methyltransferase (NCBI) low > 76
Escherichia coli Nissle 1917 0.45 ECOLIN_RS06285 7-methyl-GTP pyrophosphatase 0.40 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Shewanella oneidensis MR-1 0.45 SO2782 maf protein, putative (NCBI ptt file) 0.40 SO1851 conserved hypothetical protein (NCBI ptt file) low > 76
Dickeya dianthicola 67-19 0.45 HGI48_RS13215 septum formation inhibitor Maf 0.40 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 71
Dickeya dianthicola ME23 0.45 DZA65_RS13685 septum formation inhibitor Maf 0.40 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Pantoea sp. MT58 0.45 IAI47_12100 septum formation inhibitor Maf 0.39 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 76
Klebsiella michiganensis M5al 0.45 BWI76_RS11060 septum formation inhibitor Maf 0.40 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase low > 92
Shewanella sp. ANA-3 0.43 Shewana3_2564 maf protein (RefSeq) 0.40 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_1759 MAF protein 0.41 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) low > 40
Rahnella sp. WP5 0.43 EX31_RS24405 septum formation inhibitor Maf 0.38 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 89
Lysobacter sp. OAE881 0.40 ABIE51_RS13975 Maf family nucleotide pyrophosphatase 0.39 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 62
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.4001.1 FIG146278: Maf/YceF/YhdE family protein 0.40 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 74
Shewanella loihica PV-4 0.39 Shew_1597 maf protein (RefSeq) 0.40 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.36 Sama_1986 septum formation protein Maf (RefSeq) 0.41 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.36 MIT1002_01727 Maf-like protein YceF 0.38 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L low > 70
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_05685 7-methyl-GTP pyrophosphatase 0.42 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 52
Acinetobacter radioresistens SK82 0.35 MPMX26_01735 7-methyl-GTP pyrophosphatase 0.38 MPMX26_01097 Ribosomal RNA large subunit methyltransferase K/L low > 36
Rhodanobacter denitrificans MT42 0.35 LRK55_RS00990 Maf family protein 0.43 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 63
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS01215 Maf family nucleotide pyrophosphatase 0.43 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 59
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS06200 Maf family nucleotide pyrophosphatase 0.45 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74

Not shown: 22 genomes with orthologs for PP_1909 only; 0 genomes with orthologs for PP_2096 only