| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 1.0 | PP_1654 | | cysteine synthase B | 0.53 | 4 |
| Pseudomonas fluorescens GW456-L13 | 0.78 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.89 | PfGW456L13_2032 | | Cysteine synthase B (EC 2.5.1.47) | low | > 87 |
| Pseudomonas simiae WCS417 | 0.78 | PS417_23875 | | molecular chaperone DnaK | 0.92 | PS417_20160 | | cysteine synthase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.77 | AO356_16095 | | molecular chaperone DnaK | 0.90 | AO356_19050 | | cysteine synthase | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.92 | PFLU_RS22105 | | cysteine synthase CysM | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.92 | PFLU_RS22105 | | cysteine synthase CysM | low | > 109 |
| Pseudomonas sp. RS175 | 0.77 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.90 | PFR28_03225 | | Cysteine synthase B | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.76 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.89 | Pf1N1B4_3506 | | Cysteine synthase B (EC 2.5.1.47) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.76 | AO353_14420 | | molecular chaperone DnaK | 0.91 | AO353_02720 | | cysteine synthase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.87 | Psyr_3697 | | cysteine synthase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.87 | Psyr_3697 | | cysteine synthase | — | — |
| Pseudomonas sp. S08-1 | 0.71 | OH686_17280 | | RNA polymerase-binding protein DksA | 0.83 | OH686_18950 | | cysteine synthase B | — | — |
| Pseudomonas stutzeri RCH2 | 0.69 | Psest_1003 | | RNA polymerase-binding protein DksA | 0.88 | Psest_1638 | | cysteine synthase B | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.68 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | 0.90 | Pf6N2E2_5721 | | Cysteine synthase B (EC 2.5.1.47) | — | — |
| Serratia liquefaciens MT49 | 0.65 | IAI46_21210 | | RNA polymerase-binding protein DksA | 0.64 | IAI46_18490 | | cysteine synthase CysM | low | > 86 |
| Kangiella aquimarina DSM 16071 | 0.65 | B158DRAFT_0056 | | transcriptional regulator, TraR/DksA family | 0.32 | B158DRAFT_1208 | | cystathionine beta-synthase (acetylserine-dependent) (EC 4.2.1.-) | low | > 40 |
| Pectobacterium carotovorum WPP14 | 0.65 | HER17_RS05580 | | RNA polymerase-binding protein DksA | 0.66 | HER17_RS17210 | | cysteine synthase CysM | low | > 75 |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | 0.68 | NOLOHH_13850 | cysM | cysteine synthase B | — | — |
| Escherichia coli ECRC101 | 0.64 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.67 | OKFHMN_22170 | cysM | cysteine synthase B | — | — |
| Escherichia coli Nissle 1917 | 0.64 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | 0.68 | ECOLIN_RS13900 | | cysteine synthase B | — | — |
| Escherichia coli ECRC101 | 0.64 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.67 | MCAODC_12700 | cysM | cysteine synthase B | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.64 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.68 | GFF2055 | | Cysteine synthase (EC 2.5.1.47) | low | > 78 |
| Escherichia coli BW25113 | 0.64 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | 0.68 | b2421 | cysM | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | low | > 76 |
| Dickeya dadantii 3937 | 0.64 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | 0.66 | DDA3937_RS04425 | | cysteine synthase CysM | — | — |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | 0.68 | HEPCGN_21345 | cysM | cysteine synthase B | low | > 85 |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | 0.67 | NIAGMN_19940 | cysM | cysteine synthase B | — | — |
| Escherichia coli ECRC62 | 0.64 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | 0.68 | BNILDI_12715 | cysM | cysteine synthase B | — | — |
| Escherichia coli BL21 | 0.64 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | 0.68 | ECD_02321 | | cysteine synthase B (O-acetylserine sulfhydrolase B) | — | — |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | 0.68 | EX28DRAFT_0209 | | cysteine synthase B | — | — |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | 0.63 | LU632_RS06675 | cysM | cysteine synthase CysM | — | — |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | 0.67 | JDDGAC_26120 | cysM | cysteine synthase B | — | — |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.68 | MPMX20_03313 | | Cysteine synthase B | — | — |
| Escherichia fergusonii Becca | 0.64 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.68 | EFB2_01456 | | Cysteine synthase B | low | > 86 |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | 0.67 | KEDOAH_06050 | cysM | cysteine synthase B | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | 0.68 | OHPLBJKB_01302 | | Cysteine synthase B | low | > 73 |
| Rahnella sp. WP5 | 0.64 | EX31_RS03250 | | RNA polymerase-binding protein DksA | 0.68 | EX31_RS20205 | | cysteine synthase CysM | low | > 89 |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | 0.66 | DZA65_RS04315 | | cysteine synthase CysM | — | — |
| Dickeya dianthicola 67-19 | 0.64 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | 0.65 | HGI48_RS04400 | | cysteine synthase CysM | low | > 71 |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS05015 | | transcriptional regulator | 0.68 | BWI76_RS20685 | | cysteine synthase B | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.73 | CSW01_02845 | | cysteine synthase CysM | low | > 62 |
| Pantoea sp. MT58 | 0.63 | IAI47_15635 | | RNA polymerase-binding protein DksA | 0.62 | IAI47_05405 | | cysteine synthase CysM | low | > 76 |
| Shewanella sp. ANA-3 | 0.60 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | 0.69 | Shewana3_3188 | cysM | cysteine synthase B (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.60 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | 0.68 | SO3598 | cysM | cysteine synthase B (NCBI ptt file) | — | — |
| Marinobacter adhaerens HP15 | 0.60 | HP15_332 | | transcriptional regulator, TraR/DksA family | 0.77 | HP15_789 | | cysteine synthase B | — | — |
| Dechlorosoma suillum PS | 0.54 | Dsui_2717 | | RNA polymerase-binding protein DksA | 0.71 | Dsui_1954 | | cysteine synthase B | — | — |
| Ralstonia solanacearum PSI07 | 0.35 | RPSI07_RS23720 | | RNA polymerase-binding protein DksA | 0.68 | RPSI07_RS19645 | | cysteine synthase CysM | — | — |
| Ralstonia sp. UNC404CL21Col | 0.35 | ABZR87_RS05100 | | RNA polymerase-binding protein DksA | 0.68 | ABZR87_RS09515 | | cysteine synthase CysM | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS01030 | | molecular chaperone DnaK | 0.68 | RR42_RS04535 | | cysteine synthase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.34 | HSERO_RS00840 | | molecular chaperone DnaK | 0.69 | HSERO_RS04915 | | cysteine synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS09645 | | RNA polymerase-binding protein DksA | 0.69 | RALBFv3_RS13825 | | cysteine synthase CysM | — | — |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | 0.62 | ABCV34_RS07055 | | cysteine synthase CysM | — | — |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS03935 | | RNA polymerase-binding protein DksA | 0.69 | UW163_RS15985 | | cysteine synthase CysM | — | — |
| Ralstonia solanacearum GMI1000 | 0.33 | RS_RS00230 | | RNA polymerase-binding protein DksA | 0.69 | RS_RS04560 | | cysteine synthase CysM | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS00340 | | RNA polymerase-binding protein DksA | 0.69 | QEN71_RS04135 | | cysteine synthase CysM | — | — |
Not shown: 18 genomes with orthologs for PP_4693 only; 16 genomes with orthologs for PP_1654 only