Conservation of cofitness between PP_3417 and PP_0365 in Pseudomonas putida KT2440

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3417 D-gluconate transporter 1.0 PP_0365 Malonyl-[acyl-carrier protein] O-methyltransferase 0.52 9
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_3338 gluconate permease GntT 0.70 Psyr_4684 biotin synthesis protein BioC low > 86
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_3338 gluconate permease GntT 0.70 Psyr_4684 biotin synthesis protein BioC low > 86
Pseudomonas fluorescens SBW25 0.77 PFLU_RS23585 GntP family permease 0.70 PFLU_RS27635 malonyl-ACP O-methyltransferase BioC 0.72 7
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS23585 GntP family permease 0.70 PFLU_RS27635 malonyl-ACP O-methyltransferase BioC 0.41 14
Pseudomonas simiae WCS417 0.77 PS417_21980 permease DsdX 0.70 PS417_25990 malonyl-CoA O-methyltransferase 0.25 8
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_2863 Gluconate permease 0.71 Pf6N2E2_4763 Biotin synthesis protein BioC 0.34 40
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_03245 permease DsdX 0.70 AO353_07510 malonyl-[acyl-carrier protein] O-methyltransferase BioC 0.39 24
Pseudomonas sp. RS175 0.75 PFR28_00595 High-affinity gluconate transporter 0.68 PFR28_04100 Malonyl-[acyl-carrier protein] O-methyltransferase 0.20 17
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_05055 permease DsdX 0.72 AO356_14150 malonyl-[acyl-carrier protein] O-methyltransferase BioC low > 104
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_1927 Gluconate permease 0.68 PfGW456L13_1150 Biotin synthesis protein BioC 0.38 42
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_556 Gluconate permease 0.68 Pf1N1B4_2490 Biotin synthesis protein BioC low > 87
Herbaspirillum seropedicae SmR1 0.72 HSERO_RS05470 permease 0.18 HSERO_RS20805 methyltransferase — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS28835 gluconate:H+ symporter (gntT) (from data) 0.16 RR42_RS01865 amidophosphoribosyltransferase — —
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS13375 permease 0.17 BPHYT_RS02630 amidophosphoribosyltransferase — —
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS26910 GntP family permease 0.18 QEN71_RS01485 methyltransferase domain-containing protein — —
Ralstonia solanacearum GMI1000 0.53 RS_RS22870 permease 0.15 RS_RS01775 SAM-dependent methyltransferase — —
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS19095 gluconate:H+ symporter 0.13 ABZR87_RS06785 methyltransferase domain-containing protein — —
Ralstonia solanacearum PSI07 0.53 RPSI07_RS05470 permease 0.14 RPSI07_RS22375 SAM-dependent methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS18165 permease 0.14 RALBFv3_RS10935 SAM-dependent methyltransferase — —
Ralstonia solanacearum UW163 0.52 UW163_RS20965 permease 0.14 UW163_RS02645 SAM-dependent methyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_04276 gluconate permease GntT 0.18 H281DRAFT_01996 malonyl-CoA O-methyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS12640 gluconate:H+ symporter 0.29 ABZR86_RS15820 malonyl-ACP O-methyltransferase BioC — —
Enterobacter sp. TBS_079 0.46 MPMX20_04302 High-affinity gluconate transporter 0.21 MPMX20_01405 Malonyl-[acyl-carrier protein] O-methyltransferase low > 85
Pantoea sp. MT58 0.45 IAI47_14085 gluconate transporter 0.27 IAI47_13520 malonyl-ACP O-methyltransferase BioC low > 76
Dickeya dianthicola 67-19 0.45 HGI48_RS19890 gluconate transporter 0.29 HGI48_RS08685 malonyl-ACP O-methyltransferase BioC low > 71
Dickeya dianthicola ME23 0.45 DZA65_RS20960 gluconate transporter 0.29 DZA65_RS08975 malonyl-ACP O-methyltransferase BioC low > 75
Enterobacter asburiae PDN3 0.45 EX28DRAFT_4127 gluconate transporter 0.21 EX28DRAFT_2214 malonyl-acyl carrier protein O-methyltransferase BioC low > 76
Dickeya dadantii 3937 0.44 DDA3937_RS19775 gluconate transporter 0.30 DDA3937_RS08520 malonyl-ACP O-methyltransferase BioC low > 74
Serratia liquefaciens MT49 0.44 IAI46_23960 gluconate transporter 0.33 IAI46_06535 malonyl-ACP O-methyltransferase BioC low > 86
Escherichia coli BL21 0.44 ECD_03267 gluconate transporter, high-affinity GNT I system 0.25 ECD_00744 malonyl-ACP O-methyltransferase, SAM-dependent low > 60
Escherichia coli ECRC101 0.44 MCAODC_07515 gntT gluconate transporter 0.25 MCAODC_25605 bioC malonyl-ACP O-methyltransferase BioC — —
Escherichia coli ECRC102 0.44 NIAGMN_14755 gntT gluconate transporter 0.25 NIAGMN_04435 bioC malonyl-ACP O-methyltransferase BioC — —
Escherichia coli ECOR27 0.44 NOLOHH_08770 gntT gluconate transporter 0.24 NOLOHH_22760 bioC malonyl-ACP O-methyltransferase BioC low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00288 High-affinity gluconate transporter 0.25 OHPLBJKB_02936 Malonyl-[acyl-carrier protein] O-methyltransferase low > 73
Escherichia coli ECRC99 0.44 KEDOAH_11155 gntT gluconate transporter 0.25 KEDOAH_21520 bioC malonyl-ACP O-methyltransferase BioC — —
Escherichia coli Nissle 1917 0.44 ECOLIN_RS19505 gluconate transporter 0.25 ECOLIN_RS04140 malonyl-ACP O-methyltransferase BioC low > 52
Escherichia coli ECRC101 0.44 OKFHMN_16985 gntT gluconate transporter 0.25 OKFHMN_06390 bioC malonyl-ACP O-methyltransferase BioC — —
Escherichia coli ECRC98 0.44 JDDGAC_20615 gntT gluconate transporter 0.25 JDDGAC_10025 bioC malonyl-ACP O-methyltransferase BioC — —
Escherichia coli ECOR38 0.44 HEPCGN_15795 gntT gluconate transporter 0.25 HEPCGN_01650 bioC malonyl-ACP O-methyltransferase BioC low > 85
Escherichia coli BW25113 0.44 b3415 gntT gluconate transporter, high-affinity GNT I system (NCBI) 0.25 b0777 bioC predicted methltransferase, enzyme of biotin synthesis (NCBI) low > 76
Escherichia coli ECRC62 0.44 BNILDI_02745 gntT gluconate transporter 0.25 BNILDI_21030 bioC malonyl-ACP O-methyltransferase BioC — —
Escherichia fergusonii Becca 0.44 EFB2_00413 High-affinity gluconate transporter 0.25 EFB2_03328 Malonyl-[acyl-carrier protein] O-methyltransferase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF602 High-affinity gluconate transporter GntT 0.22 GFF673 Biotin synthesis protein BioC low > 78
Klebsiella michiganensis M5al 0.43 BWI76_RS26615 gluconate:H+ symporter (from data) 0.22 BWI76_RS08770 malonyl-ACP O-methyltransferase BioC low > 92
Rahnella sp. WP5 0.42 EX31_RS05050 gluconate transporter 0.30 EX31_RS23705 malonyl-ACP O-methyltransferase BioC low > 89
Erwinia tracheiphila SCR3 0.35 LU632_RS19170 gntU gluconate transporter 0.26 LU632_RS09140 bioC malonyl-ACP O-methyltransferase BioC — —
Pectobacterium carotovorum WPP14 0.28 HER17_RS00545 GntP family transporter 0.31 HER17_RS13450 malonyl-ACP O-methyltransferase BioC low > 75
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_01470 permease 0.32 CSW01_05655 malonyl-[acyl-carrier protein] O-methyltransferase BioC low > 62
Shewanella loihica PV-4 0.23 Shew_2533 gluconate transporter (RefSeq) 0.17 Shew_1721 methyltransferase type 11 (RefSeq) — —
Shewanella oneidensis MR-1 0.22 SO1771 permease, GntP family (NCBI ptt file) 0.20 SO2738 bioC biotin synthesis protein BioC (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.21 Shewana3_2684 gluconate transporter (RefSeq) 0.19 Shewana3_2517 biotin biosynthesis protein BioC (RefSeq) — —

Not shown: 9 genomes with orthologs for PP_3417 only; 14 genomes with orthologs for PP_0365 only