Conservation of cofitness between PFLU_RS09095 and PFLU_RS22415 in Pseudomonas fluorescens SBW25

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS09095 AI-2E family transporter 1.0 PFLU_RS22415 recombination protein RecR 0.49 17
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS09095 AI-2E family transporter 1.00 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas simiae WCS417 0.99 PS417_09040 hypothetical protein 1.00 PS417_20800 recombination protein RecR low > 88
Pseudomonas fluorescens FW300-N2E2 0.86 Pf6N2E2_5882 Putative membrane protein 0.96 Pf6N2E2_2325 Recombination protein RecR low > 103
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_19830 hypothetical protein 0.96 AO356_02495 recombination protein RecR low > 104
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_2055 Putative membrane protein 0.93 PfGW456L13_4074 Recombination protein RecR low > 87
Pseudomonas sp. RS175 0.84 PFR28_03068 Putative transport protein YdiK 0.96 PFR28_01077 Recombination protein RecR low > 88
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_3528 Putative membrane protein 0.94 Pf1N1B4_3864 Recombination protein RecR low > 87
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_01690 hypothetical protein 0.95 AO353_00675 recombination protein RecR low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_2029 Protein of unknown function UPF0118 0.93 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_2029 Protein of unknown function UPF0118 0.93 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas putida KT2440 0.78 PP_4162 conserved membrane protein of unknown function 0.93 PP_4267 Recombination protein RecR low > 96
Pseudomonas sp. S08-1 0.68 OH686_01920 Uncharacterized UPF0118 membrane protein 0.85 OH686_02385 recombination protein RecR low > 80
Pseudomonas stutzeri RCH2 0.67 Psest_2464 Predicted permease 0.86 Psest_2545 recombination protein RecR low > 67
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS03900 membrane protein 0.52 RR42_RS13270 recombination protein RecR low > 128
Paraburkholderia graminis OAS925 0.38 ABIE53_001629 putative PurR-regulated permease PerM 0.49 ABIE53_002048 recombination protein RecR low > 113
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS06810 membrane protein 0.49 BPHYT_RS09070 recombination protein RecR low > 109
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_04605 Predicted PurR-regulated permease PerM 0.49 H281DRAFT_00834 DNA replication and repair protein RecR low > 103
Dechlorosoma suillum PS 0.37 Dsui_0423 putative permease 0.53 Dsui_1811 recombination protein RecR low > 51
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS23970 AI-2E family transporter 0.48 QEN71_RS22285 recombination mediator RecR low > 153
Sinorhizobium meliloti 1021 0.33 SMa0447 hypothetical protein 0.35 SMc02908 recombination protein RecR low > 103
Escherichia coli ECOR27 0.29 NOLOHH_17745 ydiK AI-2E family transporter YdiK 0.64 NOLOHH_01085 recR recombination mediator RecR low > 75
Escherichia coli ECRC102 0.29 NIAGMN_00840 ydiK AI-2E family transporter YdiK 0.64 NIAGMN_06210 recR recombination mediator RecR — —
Escherichia coli ECRC100 0.29 OKFHMN_27225 ydiK AI-2E family transporter YdiK 0.64 OKFHMN_08155 recR recombination mediator RecR low > 80
Escherichia coli Nissle 1917 0.29 ECOLIN_RS09435 AI-2E family transporter YdiK 0.64 ECOLIN_RS02805 recombination mediator RecR — —
Escherichia coli ECRC62 0.29 BNILDI_16535 ydiK AI-2E family transporter YdiK 0.64 BNILDI_22505 recR recombination mediator RecR low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_02036 Putative transport protein YdiK 0.64 OHPLBJKB_03202 Recombination protein RecR low > 73
Escherichia coli BW25113 0.29 b1688 ydiK predicted inner membrane protein (NCBI) 0.64 b0472 recR recombination protein RecR (NCBI) low > 76
Escherichia coli ECOR38 0.29 HEPCGN_05610 ydiK AI-2E family transporter YdiK 0.64 HEPCGN_06770 recR recombination mediator RecR low > 87
Escherichia coli BL21 0.29 ECD_01657 UPF0118 family inner membrane protein 0.64 ECD_00423 gap repair protein low > 61
Escherichia coli ECRC101 0.29 MCAODC_18185 ydiK AI-2E family transporter YdiK 0.64 MCAODC_27380 recR recombination mediator RecR low > 87
Escherichia coli ECRC99 0.29 KEDOAH_00885 ydiK AI-2E family transporter YdiK 0.64 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia fergusonii Becca 0.29 EFB2_02304 Putative transport protein YdiK 0.64 EFB2_03586 Recombination protein RecR low > 86
Escherichia coli ECRC98 0.29 JDDGAC_01800 ydiK AI-2E family transporter YdiK 0.64 JDDGAC_11805 recR recombination mediator RecR low > 86
Dickeya dadantii 3937 0.29 DDA3937_RS12800 AI-2E family transporter YdiK 0.63 DDA3937_RS05790 recombination protein RecR low > 74
Rahnella sp. WP5 0.29 EX31_RS13930 AI-2E family transporter YdiK 0.64 EX31_RS22525 recombination protein RecR low > 89
Enterobacter sp. TBS_079 0.29 MPMX20_01925 Putative transport protein YdiK 0.64 MPMX20_01074 Recombination protein RecR low > 85
Klebsiella michiganensis M5al 0.29 BWI76_RS17055 hypothetical protein 0.64 BWI76_RS06830 recombination protein RecR low > 92
Dickeya dianthicola ME23 0.29 DZA65_RS13330 AI-2E family transporter YdiK 0.63 DZA65_RS06165 recombination protein RecR low > 75
Enterobacter asburiae PDN3 0.29 EX28DRAFT_1697 Predicted permease 0.64 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Pectobacterium carotovorum WPP14 0.28 HER17_RS08900 AI-2E family transporter YdiK 0.63 HER17_RS15695 recombination mediator RecR low > 75
Erwinia tracheiphila SCR3 0.28 LU632_RS11035 ydiK AI-2E family transporter YdiK 0.63 LU632_RS18105 recR recombination mediator RecR low > 74
Dickeya dianthicola 67-19 0.28 HGI48_RS12865 AI-2E family transporter YdiK 0.63 HGI48_RS05840 recombination protein RecR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF3553 Putative membrane protein 0.63 GFF4390 Recombination protein RecR low > 78
Pantoea sp. MT58 0.27 IAI47_10895 AI-2E family transporter YdiK 0.63 IAI47_14465 recombination protein RecR low > 76
Serratia liquefaciens MT49 0.27 IAI46_11125 AI-2E family transporter YdiK 0.63 IAI46_05240 recombination protein RecR low > 86
Acinetobacter radioresistens SK82 0.27 MPMX26_02768 Putative transport protein YdiK 0.53 MPMX26_01643 Recombination protein RecR low > 36
Rhizobium sp. OAE497 0.25 ABIE40_RS23785 AI-2E family transporter 0.33 ABIE40_RS00300 recombination mediator RecR low > 107
Azospirillum brasilense Sp245 0.19 AZOBR_RS27390 transporter 0.39 AZOBR_RS03880 recombinase RecR low > 97
Shewanella sp. ANA-3 0.19 Shewana3_2910 hypothetical protein (RefSeq) 0.59 Shewana3_2444 recR recombination protein RecR (RefSeq) low > 73
Shewanella loihica PV-4 0.19 Shew_0691 hypothetical protein (RefSeq) 0.60 Shew_2233 recombination protein RecR (RefSeq) low > 60
Shewanella oneidensis MR-1 0.18 SO0472 membrane protein, putative (NCBI ptt file) 0.59 SO2015 recR recombination protein RecR (NCBI ptt file) low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF3026 putative membrane protein 0.48 GFF4253 Recombination protein RecR low > 90
Agrobacterium fabrum C58 0.17 Atu1739 permease 0.36 Atu0093 Recombination protein low > 89
Desulfovibrio vulgaris Hildenborough JW710 0.11 DVU0128 membrane protein, putative (TIGR) 0.29 DVU3200 recR recombination protein RecR (TIGR) low > 55

Not shown: 0 genomes with orthologs for PFLU_RS09095 only; 46 genomes with orthologs for PFLU_RS22415 only