| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens SBW25 | 1.0 | PFLU_RS04350 | | metalloprotease PmbA | 1.0 | PFLU_RS06645 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.63 | 18 |
| Pseudomonas fluorescens SBW25-INTG | 1.00 | PFLU_RS04350 | | metalloprotease PmbA | 1.00 | PFLU_RS06645 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.33 | 51 |
| Pseudomonas simiae WCS417 | 0.98 | PS417_04295 | | peptidase PmbA | 0.99 | PS417_06615 | | ABC transporter for branched-chain amino acids, substrate-binding component (from data) | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_07085 | | peptidase PmbA | 0.89 | AO356_05320 | | leucine ABC transporter substrate-binding protein | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.95 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.88 | Pf6N2E2_2921 | | ABC transporter for L-leucine/L-phenylalanine/D-alanine, substrate-binding component LivK (from data) | low | > 103 |
| Pseudomonas sp. RS175 | 0.95 | PFR28_00163 | | Metalloprotease PmbA | 0.91 | PFR28_00540 | | Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.93 | AO353_05205 | | peptidase PmbA | 0.94 | AO353_17125 | | leucine ABC transporter substrate-binding protein | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.93 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.88 | PfGW456L13_4606 | | High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.93 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.89 | Pf1N1B4_3218 | | High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) | low | > 87 |
| Pseudomonas putida KT2440 | 0.90 | PP_0942 | | regulatory protease | 0.90 | PP_1141 | | branched-chain amino acids ABC transporter - periplasmic leucine binding subunit | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.89 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.86 | Psyr_3845 | | L-leucine-binding protein / L-valine-binding protein / L-isoleucine-binding protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.89 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.86 | Psyr_3845 | | L-leucine-binding protein / L-valine-binding protein / L-isoleucine-binding protein | low | > 86 |
| Pseudomonas sp. S08-1 | 0.81 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.74 | OH686_04605 | | Branched-chain amino acid ABC transporter, substrate-binding protein LivJ | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.77 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.74 | Psest_1312 | | ABC-type branched-chain amino acid transport systems, periplasmic component | low | > 67 |
| Pectobacterium carotovorum WPP14 | 0.50 | HER17_RS20090 | | metalloprotease PmbA | 0.59 | HER17_RS00495 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 75 |
| Rahnella sp. WP5 | 0.49 | EX31_RS12320 | | metalloprotease PmbA | 0.59 | EX31_RS14805 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 89 |
| Escherichia fergusonii Becca | 0.48 | EFB2_04298 | | Metalloprotease PmbA | 0.57 | EFB2_00362 | | Leu/Ile/Val-binding protein | low | > 86 |
| Enterobacter asburiae PDN3 | 0.48 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.58 | EX28DRAFT_4293 | | ABC-type branched-chain amino acid transport systems, periplasmic component | low | > 76 |
| Enterobacter sp. TBS_079 | 0.48 | MPMX20_00517 | | Metalloprotease PmbA | 0.58 | MPMX20_04336 | | Leu/Ile/Val-binding protein | low | > 85 |
| Escherichia coli ECRC98 | 0.48 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.57 | JDDGAC_20350 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | low | > 86 |
| Escherichia coli ECRC62 | 0.48 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.57 | BNILDI_02990 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | low | > 75 |
| Escherichia coli BL21 | 0.48 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.57 | ECD_03309 | | branched-chain amino acid ABC transporter periplasmic binding protein | low | > 61 |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.57 | NOLOHH_08525 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | low | > 75 |
| Escherichia coli ECOR38 | 0.48 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.58 | HEPCGN_15550 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | low | > 87 |
| Escherichia coli BW25113 | 0.48 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.57 | b3460 | livJ | leucine/isoleucine/valine transporter subunit (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.48 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.57 | OKFHMN_16720 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | low | > 80 |
| Escherichia coli ECRC102 | 0.48 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.57 | NIAGMN_14490 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | — | — |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.57 | ECOLIN_RS19790 | | branched chain amino acid ABC transporter substrate-binding protein LivJ | low | > 55 |
| Escherichia coli ECRC99 | 0.48 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.57 | KEDOAH_11420 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.48 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.57 | OHPLBJKB_00243 | | Leu/Ile/Val-binding protein | low | > 73 |
| Escherichia coli ECRC101 | 0.48 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.57 | MCAODC_07250 | livJ | branched chain amino acid ABC transporter substrate-binding protein LivJ | low | > 87 |
| Klebsiella michiganensis M5al | 0.48 | BWI76_RS02850 | | metalloprotease PmbA | 0.58 | BWI76_RS26365 | | branched chain amino acid ABC transporter substrate-binding protein | low | > 92 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_22575 | | metalloprotease PmbA | 0.60 | IAI46_00960 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.48 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.58 | GFF545 | | High-affinity leucine-specific transport system, periplasmic binding protein LivK (TC 3.A.1.4.1) | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.47 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.59 | LU632_RS19255 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 74 |
| Dickeya dianthicola 67-19 | 0.47 | HGI48_RS01415 | | metalloprotease PmbA | 0.59 | HGI48_RS20730 | | high-affinity branched-chain amino acid ABC transporter substrate-binding protein | low | > 71 |
| Dickeya dadantii 3937 | 0.47 | DDA3937_RS01500 | | metalloprotease PmbA | 0.60 | DDA3937_RS00660 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 74 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS01480 | | metalloprotease PmbA | 0.58 | DZA65_RS21740 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 75 |
| Pantoea sp. MT58 | 0.46 | IAI47_02765 | | metalloprotease PmbA | 0.61 | IAI47_01565 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 76 |
| Variovorax sp. SCN45 | 0.46 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.26 | GFF237 | | ABC-type branched-chain amino acid transport systems, periplasmic component | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS09265 | | peptidase C69 | 0.57 | HSERO_RS08270 | | amino acid ABC transporter substrate-binding protein | low | > 78 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS15845 | | metalloprotease PmbA | 0.25 | UW163_RS08975 | | branched-chain amino acid ABC transporter substrate-binding protein | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.25 | RALBFv3_RS04695 | | branched-chain amino acid ABC transporter substrate-binding protein | 0.63 | 57 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS04270 | | metalloprotease PmbA | 0.27 | QEN71_RS00600 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.27 | H281DRAFT_02161 | | amino acid/amide ABC transporter substrate-binding protein, HAAT family | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS09660 | | metalloprotease PmbA | 0.25 | ABZR87_RS00315 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.44 | ABIE53_003116 | | PmbA protein | 0.27 | ABIE53_000461 | | branched-chain amino acid transport system substrate-binding protein | low | > 113 |
| Cupriavidus basilensis FW507-4G11 | 0.44 | RR42_RS14750 | | peptidase PMbA | 0.56 | RR42_RS14425 | | leucine ABC transporter substrate-binding protein | low | > 128 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14705 | | peptidase C69 | 0.27 | BPHYT_RS01885 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS19505 | | metalloprotease PmbA | 0.25 | RPSI07_RS12690 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 81 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS10610 | | metalloprotease PmbA | 0.54 | ABCV34_RS03585 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 48 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS04700 | | metalloprotease PmbA | 0.25 | RS_RS12255 | | branched-chain amino acid ABC transporter substrate-binding protein | low | > 80 |
| Azospirillum sp. SherDot2 | 0.28 | MPMX19_01886 | | Metalloprotease PmbA | 0.44 | MPMX19_04840 | | Leu/Ile/Val-binding protein | low | > 112 |
| Dinoroseobacter shibae DFL-12 | 0.27 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.13 | Dshi_1522 | | Extracellular ligand-binding receptor (RefSeq) | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c33480 | | protein PmbA | 0.11 | PGA1_c15890 | | extracellular ligand-binding receptor | — | — |
Not shown: 32 genomes with orthologs for PFLU_RS04350 only; 5 genomes with orthologs for PFLU_RS06645 only