Conservation of cofitness between HSERO_RS01560 and HSERO_RS22770 in Herbaspirillum seropedicae SmR1

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS01560 transporter 1.0 HSERO_RS22770 LysR family transcriptional regulator 0.37 5
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS20105 efflux RND transporter permease subunit 0.77 QEN71_RS19730 LysR family transcriptional regulator low > 153
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS22515 multidrug efflux RND transporter permease subunit 0.30 BPHYT_RS26650 LysR family transcriptional regulator — —
Azospirillum brasilense Sp245 0.73 AZOBR_RS28205 transporter 0.73 AZOBR_RS24270 LysR family transcriptional regulator low > 97
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS19400 efflux RND transporter permease subunit 0.32 ABZR87_RS20875 LysR family transcriptional regulator low > 80
Ralstonia solanacearum PSI07 0.72 RPSI07_RS05175 multidrug efflux RND transporter permease subunit 0.34 RPSI07_RS02550 LysR family transcriptional regulator low > 81
Ralstonia solanacearum UW163 0.72 UW163_RS20755 multidrug efflux RND transporter permease subunit 0.33 UW163_RS18860 LysR family transcriptional regulator — —
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS18375 multidrug efflux RND transporter permease subunit 0.33 RALBFv3_RS20315 LysR family transcriptional regulator low > 76
Azospirillum sp. SherDot2 0.71 MPMX19_02968 multidrug efflux RND transporter permease subunit OqxB28 0.56 MPMX19_00645 HTH-type transcriptional regulator MetR low > 112
Ralstonia solanacearum GMI1000 0.71 RS_RS22490 multidrug efflux RND transporter permease subunit 0.32 RS_RS20365 LysR family transcriptional regulator low > 80
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS27685 multidrug efflux RND transporter permease subunit 0.31 RR42_RS30655 LysR family transcriptional regulator low > 128
Acidovorax sp. GW101-3H11 0.69 Ac3H11_258 RND multidrug efflux transporter; Acriflavin resistance protein 0.30 Ac3H11_2344 Transcriptional activator MetR low > 79
Variovorax sp. SCN45 0.68 GFF429 RND efflux system, inner membrane transporter 0.86 GFF4176 Transcriptional activator MetR low > 127
Variovorax sp. OAS795 0.67 ABID97_RS17350 efflux RND transporter permease subunit 0.30 ABID97_RS19400 LysR family transcriptional regulator — —
Pseudomonas sp. RS175 0.66 PFR28_02013 multidrug efflux RND transporter permease subunit OqxB10 0.40 PFR28_03478 HTH-type transcriptional regulator MetR low > 88
Agrobacterium fabrum C58 0.63 Atu2483 AcrB/AcrD/AcrF family protein 0.57 Atu3827 LysR family transcriptional regulator low > 89
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.42 Psyr_3917 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.42 Psyr_3917 transcriptional regulator, LysR family low > 86
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_27605 transporter 0.40 AO356_17735 XRE family transcriptional regulator low > 104
Pseudomonas putida KT2440 0.61 PP_3426 Multidrug efflux RND transporter MexF 0.41 PP_2696 DNA-binding transcriptional regulator, homocysteine-binding low > 96
Pseudomonas simiae WCS417 0.61 PS417_13190 transporter 0.40 PS417_05455 XRE family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS14260 efflux RND transporter permease subunit 0.41 PFLU_RS05540 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.61 PFLU_RS14260 efflux RND transporter permease subunit 0.41 PFLU_RS05540 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_23960 transporter 0.40 AO353_16210 XRE family transcriptional regulator low > 101
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_3060 Multidrug efflux transporter MexF 0.40 PfGW456L13_4778 Transcriptional activator MetR low > 87
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_4864 Multidrug efflux transporter MexF 0.40 Pf1N1B4_784 Transcriptional activator MetR low > 87
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_824 Multidrug efflux transporter MexF 0.40 Pf6N2E2_5471 Transcriptional activator MetR low > 103
Pseudomonas stutzeri RCH2 0.60 Psest_2144 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.42 Psest_1450 Transcriptional regulator — —
Pseudomonas sp. S08-1 0.60 OH686_01005 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.41 OH686_20465 Transcriptional activator MetR 0.80 68
Shewanella sp. ANA-3 0.59 Shewana3_1078 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.35 Shewana3_3470 LysR family transcriptional regulator (RefSeq) 0.59 70
Shewanella oneidensis MR-1 0.59 SO3492 mexF RND multidrug efflux transporter MexF (NCBI ptt file) 0.35 SO0817 metR transcriptional activator protein MetR (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.58 MIT1002_02998 Efflux pump membrane transporter BepE 0.56 MIT1002_01119 HTH-type transcriptional regulator GltC low > 70
Pantoea sp. MT58 0.57 IAI47_10310 multidrug efflux RND transporter permease subunit OqxB 0.36 IAI47_18315 HTH-type transcriptional regulator MetR low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF4246 RND efflux system, inner membrane transporter CmeB 0.36 GFF253 Transcriptional activator MetR low > 78
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.3477.1 RND efflux system, inner membrane transporter CmeB 0.84 Xcc-8004.400.1 Transcriptional activator MetR low > 74
Klebsiella michiganensis M5al 0.55 BWI76_RS12955 multidrug efflux RND transporter permease subunit OqxB 0.33 BWI76_RS01275 LysR family transcriptional regulator low > 92
Rahnella sp. WP5 0.55 EX31_RS01495 multidrug efflux RND transporter permease subunit 0.35 EX31_RS25370 HTH-type transcriptional regulator MetR low > 89
Enterobacter sp. TBS_079 0.55 MPMX20_01155 multidrug efflux RND transporter permease subunit OqxB3 0.36 MPMX20_04452 HTH-type transcriptional regulator MetR low > 85
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1472 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.36 EX28DRAFT_4493 Transcriptional regulator low > 76
Serratia liquefaciens MT49 0.54 IAI46_13385 efflux RND transporter permease subunit 0.34 IAI46_01030 HTH-type transcriptional regulator MetR low > 86
Shewanella loihica PV-4 0.44 Shew_1164 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.33 Shew_2987 LysR family transcriptional regulator (RefSeq) low > 60

Not shown: 14 genomes with orthologs for HSERO_RS01560 only; 26 genomes with orthologs for HSERO_RS22770 only