Conservation of cofitness between HSERO_RS03350 and HSERO_RS15070 in Herbaspirillum seropedicae SmR1

59 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03350 hypothetical protein 1.0 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D 0.25 16
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS08070 pyruvate kinase 0.44 ABZR87_RS13315 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum PSI07 0.73 RPSI07_RS21150 pyruvate kinase 0.45 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Ralstonia solanacearum GMI1000 0.72 RS_RS02865 pyruvate kinase 0.46 RS_RS08205 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum UW163 0.72 UW163_RS01430 pyruvate kinase 0.45 UW163_RS14830 RluA family pseudouridine synthase — —
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS12180 pyruvate kinase 0.45 RALBFv3_RS01520 RluA family pseudouridine synthase low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF2780 Pyruvate kinase (EC 2.7.1.40) 0.31 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 90
Variovorax sp. SCN45 0.66 GFF5504 Pyruvate kinase (EC 2.7.1.40) 0.31 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) low > 127
Variovorax sp. OAS795 0.65 ABID97_RS01755 pyruvate kinase 0.30 ABID97_RS14190 RluA family pseudouridine synthase low > 91
Castellaniella sp019104865 MT123 0.48 ABCV34_RS02525 pyruvate kinase 0.37 ABCV34_RS01885 RluA family pseudouridine synthase low > 48
Pseudomonas putida KT2440 0.48 PP_1362 pyruvate kinase II 0.36 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase — —
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4029 pyruvate kinase 0.35 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4029 pyruvate kinase 0.35 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Dickeya dadantii 3937 0.46 DDA3937_RS10125 pyruvate kinase 0.34 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Dickeya dianthicola 67-19 0.46 HGI48_RS10155 pyruvate kinase 0.34 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.74 26
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_10025 pyruvate kinase 0.31 CSW01_03695 ribosomal large subunit pseudouridine synthase D low > 62
Dickeya dianthicola ME23 0.46 DZA65_RS10570 pyruvate kinase 0.34 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Pectobacterium carotovorum WPP14 0.46 HER17_RS11790 pyruvate kinase 0.33 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Rahnella sp. WP5 0.45 EX31_RS10640 pyruvate kinase 0.34 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Escherichia fergusonii Becca 0.45 EFB2_02088 Pyruvate kinase II 0.34 EFB2_01296 Ribosomal large subunit pseudouridine synthase D low > 86
Escherichia coli Nissle 1917 0.45 ECOLIN_RS10330 pyruvate kinase 0.34 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Escherichia coli ECOR38 0.45 HEPCGN_04725 pyk pyruvate kinase 0.34 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_01874 Pyruvate kinase II 0.34 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 73
Escherichia coli BW25113 0.45 b1854 pykA pyruvate kinase (NCBI) 0.34 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Escherichia coli BL21 0.45 ECD_01825 pyruvate kinase II 0.34 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 61
Escherichia coli ECOR27 0.45 NOLOHH_16835 pyk pyruvate kinase 0.34 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.65 47
Pseudomonas sp. S08-1 0.45 OH686_18800 pyruvate kinase 0.34 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Escherichia coli ECRC62 0.45 BNILDI_15630 pyk pyruvate kinase 0.34 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Escherichia coli ECRC98 0.45 JDDGAC_00895 pyk pyruvate kinase 0.34 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 86
Rhodanobacter denitrificans MT42 0.45 LRK55_RS05530 pyruvate kinase 0.33 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 63
Escherichia coli ECRC99 0.45 KEDOAH_01785 pyk pyruvate kinase 0.34 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_01070 pyk pyruvate kinase 0.33 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 52
Escherichia coli ECRC100 0.45 OKFHMN_26320 pyk pyruvate kinase 0.34 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 80
Escherichia coli ECRC102 0.45 NIAGMN_01740 pyk pyruvate kinase 0.34 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS05775 pyruvate kinase 0.33 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 59
Escherichia coli ECRC101 0.45 MCAODC_19085 pyk pyruvate kinase 0.34 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Erwinia tracheiphila SCR3 0.45 LU632_RS13370 pyk pyruvate kinase 0.34 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Pantoea sp. MT58 0.45 IAI47_08485 pyruvate kinase 0.33 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Alteromonas macleodii MIT1002 0.45 MIT1002_02409 Pyruvate kinase II 0.35 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF1633 Pyruvate kinase (EC 2.7.1.40) 0.33 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) 0.74 58
Serratia liquefaciens MT49 0.45 IAI46_14585 pyruvate kinase 0.34 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.56 29
Enterobacter sp. TBS_079 0.44 MPMX20_02759 Pyruvate kinase II 0.34 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Enterobacter asburiae PDN3 0.44 EX28DRAFT_0702 pyruvate kinase 0.34 EX28DRAFT_2695 pseudouridine synthase, RluA family 0.63 34
Klebsiella michiganensis M5al 0.44 BWI76_RS18115 pyruvate kinase 0.34 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS18630 pyruvate kinase 0.32 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Lysobacter sp. OAE881 0.40 ABIE51_RS17040 pyruvate kinase 0.35 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 62
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.1243.1 Pyruvate kinase (EC 2.7.1.40) 0.35 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 74
Azospirillum sp. SherDot2 0.34 MPMX19_04074 Pyruvate kinase 0.29 MPMX19_05442 Ribosomal large subunit pseudouridine synthase D low > 112
Magnetospirillum magneticum AMB-1 0.33 AMB_RS16010 pyruvate kinase 0.31 AMB_RS16095 RluA family pseudouridine synthase — —
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0685 pyruvate kinase 0.31 Ga0059261_0664 pseudouridine synthase, RluA family low > 68
Fusobacterium nucleatum SB010 0.32 HUW76_00910 pyruvate kinase PykF 0.25 HUW76_08575 RluA family pseudouridine synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_2317 pyruvate kinase 0.34 Echvi_0642 pseudouridine synthase, RluA family low > 79
Sinorhizobium meliloti 1021 0.31 SMc04005 pyruvate kinase 0.29 SMc00647 ribosomal large subunit pseudouridine synthase low > 103
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_00725 pyruvate kinase 0.30 CA264_15205 RNA pseudouridine synthase low > 74
Caulobacter crescentus NA1000 0.28 CCNA_02130 pyruvate kinase 0.29 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 66
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_02130 pyruvate kinase 0.29 CCNA_00485 ribosomal large subunit pseudouridine synthase D low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS02440 pyruvate kinase 0.26 A4249_RS10060 RluA family pseudouridine synthase — —
Methanococcus maripaludis S2 0.22 MMP_RS08250 pyruvate kinase 0.18 MMP_RS05225 RluA family pseudouridine synthase low > 25
Methanococcus maripaludis JJ 0.22 MMJJ_RS06115 pyruvate kinase 0.19 MMJJ_RS09155 RluA family pseudouridine synthase low > 28
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS04695 pyruvate kinase 0.27 HMPREF1078_RS12640 RluA family pseudouridine synthase low > 61

Not shown: 42 genomes with orthologs for HSERO_RS03350 only; 1 genomes with orthologs for HSERO_RS15070 only