Conservation of cofitness between HSERO_RS21710 and HSERO_RS14740 in Herbaspirillum seropedicae SmR1

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS21710 antibiotic resistance protein MarC 1.0 HSERO_RS14740 efflux transmembrane protein 0.42 11
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF2690 Multiple antibiotic resistance protein marC 0.42 GFF2876 Putative drug efflux protein low > 90
Paraburkholderia sabiae LMG 24235 0.31 QEN71_RS08795 MarC family protein 0.58 QEN71_RS02210 MFS transporter low > 153
Paraburkholderia bryophila 376MFSha3.1 0.29 H281DRAFT_02837 multiple antibiotic resistance protein 0.58 H281DRAFT_04235 MFS transporter, DHA1 family, arabinose polymer transporter low > 103
Paraburkholderia graminis OAS925 0.29 ABIE53_005956 multiple antibiotic resistance protein 0.59 ABIE53_003475 DHA1 family inner membrane transport protein low > 113
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS26390 antibiotic resistance protein 0.58 BPHYT_RS16520 major facilitator superfamily protein low > 109
Azospirillum sp. SherDot2 0.25 MPMX19_05781 hypothetical protein 0.45 MPMX19_01134 Inner membrane transport protein YdhP low > 112
Klebsiella michiganensis M5al 0.23 BWI76_RS15285 stress protection protein MarC 0.43 BWI76_RS05420 MFS transporter low > 92
Bacteroides thetaiotaomicron VPI-5482 0.22 BT4504 conserved hypothetical protein (NCBI ptt file) 0.32 BT3113 putative transmembrane efflux protein (NCBI ptt file) low > 81
Pectobacterium carotovorum WPP14 0.22 HER17_RS05025 MarC family NAAT transporter 0.44 HER17_RS09415 MFS transporter low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF2508 Multiple antibiotic resistance protein MarC 0.45 GFF4040 Putative drug efflux protein low > 78
Escherichia coli Nissle 1917 0.21 ECOLIN_RS08725 NAAT family transporter MarC 0.40 ECOLIN_RS09235 MFS transporter — —
Bacteroides ovatus ATCC 8483 0.21 BACOVA_05310 MarC family integral membrane protein 0.31 BACOVA_02814 transporter, major facilitator family protein low > 94
Escherichia coli ECRC99 0.21 KEDOAH_27345 marC NAAT family transporter MarC 0.40 KEDOAH_00710 ydhP Inner membrane transport protein YdhP — —
Escherichia coli ECRC62 0.21 BNILDI_17220 marC NAAT family transporter MarC 0.40 BNILDI_16710 ydhP Inner membrane transport protein YdhP low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_02190 hypothetical protein 0.40 OHPLBJKB_02068 Inner membrane transport protein YdhP low > 73
Escherichia coli BW25113 0.21 b1529 marC predicted transporter (NCBI) 0.40 b1657 ydhP predicted transporter (NCBI) — —
Escherichia coli ECOR27 0.21 NOLOHH_18730 marC NAAT family transporter MarC 0.40 NOLOHH_17920 ydhP Inner membrane transport protein YdhP low > 75
Escherichia fergusonii Becca 0.21 EFB2_02432 hypothetical protein 0.39 EFB2_02336 Inner membrane transport protein YdhP low > 86
Escherichia coli ECOR38 0.21 HEPCGN_26835 marC NAAT family transporter MarC 0.39 HEPCGN_05785 ydhP Inner membrane transport protein YdhP 0.58 53
Escherichia coli BL21 0.21 ECD_01486 UPF0056 family inner membrane protein 0.40 ECD_01627 putative MFS transporter, inner membrane protein low > 61
Enterobacter asburiae PDN3 0.21 EX28DRAFT_1204 membrane protein, MarC family 0.45 EX28DRAFT_2686 Arabinose efflux permease low > 76
Escherichia coli ECRC102 0.21 NIAGMN_25230 marC NAAT family transporter MarC 0.40 NIAGMN_00665 ydhP Inner membrane transport protein YdhP — —
Escherichia coli ECRC98 0.21 JDDGAC_03595 marC NAAT family transporter MarC 0.40 JDDGAC_01990 ydhP Inner membrane transport protein YdhP low > 86
Escherichia coli ECRC101 0.21 MCAODC_16840 marC NAAT family transporter MarC 0.40 MCAODC_18010 ydhP Inner membrane transport protein YdhP low > 87
Escherichia coli ECRC100 0.21 OKFHMN_01085 marC NAAT family transporter MarC 0.40 OKFHMN_27400 ydhP Inner membrane transport protein YdhP low > 80
Bifidobacterium breve UCC2003 0.21 BBR_RS19245 membrane protein 0.23 BBR_RS17015 MFS transporter low > 34
Erwinia tracheiphila SCR3 0.20 LU632_RS19020 MarC family NAAT transporter 0.35 LU632_RS24930 MFS transporter low > 74
Enterobacter sp. TBS_079 0.20 MPMX20_02261 hypothetical protein 0.46 MPMX20_00893 Inner membrane transport protein YdhP low > 85
Bacteroides stercoris CC31F 0.20 HMPREF1181_RS09550 NAAT family transporter 0.28 HMPREF1181_RS16545 MFS transporter AraJ low > 56
Parabacteroides merdae CL09T00C40 0.19 HMPREF1078_RS10700 MarC family protein 0.30 HMPREF1078_RS09475 MFS transporter low > 61
Shewanella amazonensis SB2B 0.18 Sama_1694 hypothetical protein (RefSeq) 0.39 Sama_2390 putative transmembrane efflux transmembrane protein (RefSeq) low > 62
Sinorhizobium meliloti 1021 0.18 SMc01232 hypothetical protein 0.45 SM_b20071 efflux protein low > 103
Rahnella sp. WP5 0.18 EX31_RS14080 MarC family NAAT transporter 0.43 EX31_RS21215 MFS transporter 0.45 42
Shewanella sp. ANA-3 0.18 Shewana3_1789 hypothetical protein (RefSeq) 0.40 Shewana3_3597 major facilitator transporter (RefSeq) low > 73
Lysobacter sp. OAE881 0.17 ABIE51_RS10495 MarC family NAAT transporter 0.53 ABIE51_RS06085 MFS transporter low > 62
Acidovorax sp. GW101-3H11 0.17 Ac3H11_2153 Multiple antibiotic resistance (MarC) -related proteins 0.37 Ac3H11_1989 Putative drug efflux protein low > 79
Ralstonia solanacearum GMI1000 0.17 RS_RS14775 membrane protein 0.39 RS_RS05745 MFS transporter — —
Ralstonia solanacearum UW163 0.17 UW163_RS06785 membrane protein 0.40 UW163_RS12400 MFS transporter — —
Ralstonia solanacearum IBSBF1503 0.17 RALBFv3_RS06830 membrane protein 0.40 RALBFv3_RS14930 MFS transporter — —
Ralstonia sp. UNC404CL21Col 0.16 ABZR87_RS02485 MarC family protein 0.41 ABZR87_RS00250 MFS transporter low > 80
Dickeya dadantii 3937 0.16 DDA3937_RS10370 YchE family NAAT transporter 0.41 DDA3937_RS03650 MFS transporter low > 74
Variovorax sp. OAS795 0.16 ABID97_RS00755 MarC family protein 0.56 ABID97_RS15820 MFS transporter low > 91
Variovorax sp. SCN45 0.16 GFF3614 UPF0056 inner membrane protein YchE 0.56 GFF1366 Uncharacterized MFS-type transporter low > 127
Agrobacterium fabrum C58 0.16 Atu1508 hypothetical protein 0.46 Atu4292 chloramphenicol resistance protein low > 89
Alteromonas macleodii MIT1002 0.15 MIT1002_03685 putative antibiotic transporter 0.44 MIT1002_01181 Inner membrane transport protein YdhP low > 70
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS18900 membrane protein 0.54 RR42_RS33820 arabinose transporter permease low > 128
Pseudomonas putida KT2440 0.13 PP_4825 Membrane protein, MarC family 0.42 PP_2535 putative inner membrane transport protein low > 96
Xanthomonas campestris pv. campestris strain 8004 0.13 Xcc-8004.2016.1 FIG01210190: hypothetical protein 0.56 Xcc-8004.1806.1 MFS transporter — —
Dyella japonica UNC79MFTsu3.2 0.13 ABZR86_RS09810 YhgN family NAAT transporter 0.47 ABZR86_RS18115 MFS transporter low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.12 A4249_RS14670 MarC family protein 0.42 A4249_RS02135 MFS transporter — —
Marinobacter adhaerens HP15 0.12 HP15_3589 multiple antibiotic resistance (MarC)-related protein 0.43 HP15_2719 transmembrane efflux protein low > 73

Not shown: 38 genomes with orthologs for HSERO_RS21710 only; 4 genomes with orthologs for HSERO_RS14740 only