Conservation of cofitness between HSERO_RS22000 and HSERO_RS02260 in Herbaspirillum seropedicae SmR1

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS22000 short-chain dehydrogenase 1.0 HSERO_RS02260 DNA polymerase I 0.39 19
Paraburkholderia graminis OAS925 0.62 ABIE53_000038 NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) 0.68 ABIE53_004852 DNA polymerase-1 low > 113
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS10155 short chain dehydrogenase 0.70 RALBFv3_RS03750 DNA polymerase I low > 76
Ralstonia solanacearum UW163 0.61 UW163_RS03425 short chain dehydrogenase 0.70 UW163_RS09920 DNA polymerase I — —
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS05645 SDR family oxidoreductase 0.70 ABZR87_RS15680 DNA polymerase I 0.56 54
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_05822 NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family 0.68 H281DRAFT_06022 DNA polymerase I low > 103
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS18580 short-chain dehydrogenase 0.68 BPHYT_RS33610 DNA polymerase I low > 109
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS01435 short-chain dehydrogenase 0.71 RR42_RS15050 DNA polymerase I low > 128
Ralstonia solanacearum GMI1000 0.58 RS_RS00770 short chain dehydrogenase 0.71 RS_RS11195 DNA polymerase I low > 80
Ralstonia solanacearum PSI07 0.58 RPSI07_RS23190 short chain dehydrogenase 0.71 RPSI07_RS13480 DNA polymerase I low > 81
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS28605 SDR family oxidoreductase 0.69 QEN71_RS17885 DNA polymerase I — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.51 GFF1630 FolM Alternative dihydrofolate reductase 1 0.59 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Acidovorax sp. GW101-3H11 0.50 Ac3H11_1819 FolM Alternative dihydrofolate reductase 1 0.60 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Variovorax sp. OAS795 0.48 ABID97_RS06515 SDR family oxidoreductase 0.62 ABID97_RS09180 DNA polymerase I low > 91
Variovorax sp. SCN45 0.48 GFF7306 FolM Alternative dihydrofolate reductase 1 0.62 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Azospirillum sp. SherDot2 0.43 MPMX19_01069 3-oxoacyl-[acyl-carrier-protein] reductase FabG 0.36 MPMX19_04869 DNA polymerase I low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS01695 SDR family oxidoreductase 0.38 A4249_RS13840 DNA polymerase I — —
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_00422 SDR pteridine reductase 0.37 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.41 CCNA_00422 SDR pteridine reductase 0.37 CCNA_03577 DNA polymerase I low > 66
Azospirillum brasilense Sp245 0.40 AZOBR_RS08970 short-chain dehydrogenase 0.36 AZOBR_RS30685 DNA polymerase 0.39 25
Rhodospirillum rubrum S1H 0.39 Rru_A2218 Short-chain dehydrogenase/reductase SDR (NCBI) 0.35 Rru_A3514 DNA polymerase A (NCBI) — —
Dinoroseobacter shibae DFL-12 0.38 Dshi_0643 short-chain dehydrogenase/reductase SDR (RefSeq) 0.37 Dshi_2909 DNA polymerase I (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.37 AMB_RS19245 short chain dehydrogenase 0.37 AMB_RS21305 DNA polymerase I — —
Phaeobacter inhibens DSM 17395 0.36 PGA1_c02870 short chain dehydrogenase 0.38 PGA1_c31780 DNA polymerase I low > 62
Sphingomonas koreensis DSMZ 15582 0.34 Ga0059261_3612 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) 0.47 2
Rhizobium sp. OAE497 0.33 ABIE40_RS06505 SDR family oxidoreductase 0.37 ABIE40_RS00490 DNA polymerase I low > 107
Sinorhizobium meliloti 1021 0.32 SMc00603 short chain dehydrogenase 0.36 SMc02850 DNA polymerase I low > 103
Bosea sp. OAE506 0.31 ABIE41_RS11470 SDR family oxidoreductase 0.34 ABIE41_RS03570 DNA polymerase I 0.38 41
Agrobacterium fabrum C58 0.31 Atu1130 dehydrogenase 0.37 Atu0110 DNA polymerase I — —
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_0830 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 0.55 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Alteromonas macleodii MIT1002 0.25 MIT1002_01601 3-oxoacyl-[acyl-carrier-protein] reductase FabG 0.54 MIT1002_00014 DNA polymerase I low > 70
Rhodanobacter denitrificans MT42 0.23 LRK55_RS07040 pteridine reductase 0.54 LRK55_RS06585 DNA polymerase I 0.58 21
Rhodanobacter denitrificans FW104-10B01 0.23 LRK54_RS07310 pteridine reductase 0.54 LRK54_RS06840 DNA polymerase I low > 59
Shewanella loihica PV-4 0.21 Shew_2034 short-chain dehydrogenase/reductase SDR (RefSeq) 0.51 Shew_3714 DNA polymerase I (RefSeq) low > 60
Shewanella amazonensis SB2B 0.20 Sama_1764 short-chain dehydrogenase/reductase SDR (RefSeq) 0.52 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Rhodanobacter sp. FW510-T8 0.20 OKGIIK_16340 pteridine reductase 0.54 OKGIIK_16785 polA DNA polymerase I low > 52
Dyella japonica UNC79MFTsu3.2 0.20 ABZR86_RS12780 pteridine reductase 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Shewanella sp. ANA-3 0.17 Shewana3_3507 short chain dehydrogenase (RefSeq) 0.53 Shewana3_4109 DNA polymerase I (RefSeq) — —
Shewanella oneidensis MR-1 0.16 SO0772 oxidoreductase, short chain dehydrogenase/reductase family (NCBI ptt file) 0.52 SO4669 polA DNA polymerase I (NCBI ptt file) — —

Not shown: 0 genomes with orthologs for HSERO_RS22000 only; 61 genomes with orthologs for HSERO_RS02260 only