Conservation of cofitness between HER17_RS06930 and HER17_RS19690 in Pectobacterium carotovorum WPP14

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06930 50S ribosomal protein L3 N(5)-glutamine methyltransferase 1.0 HER17_RS19690 cystathionine beta-lyase 0.88 18
Dickeya dadantii 3937 0.90 DDA3937_RS14585 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.85 DDA3937_RS01815 cystathionine beta-lyase low > 74
Dickeya dianthicola ME23 0.90 DZA65_RS15470 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.85 DZA65_RS01785 cystathionine beta-lyase low > 75
Dickeya dianthicola 67-19 0.90 HGI48_RS14535 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.85 HGI48_RS01710 cystathionine beta-lyase low > 71
Serratia liquefaciens MT49 0.86 IAI46_18030 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.82 IAI46_21725 cystathionine beta-lyase low > 86
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0274 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.77 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.61 1
Enterobacter sp. TBS_079 0.85 MPMX20_03265 50S ribosomal protein L3 glutamine methyltransferase 0.78 MPMX20_03852 Cystathionine beta-lyase MetC low > 85
Klebsiella michiganensis M5al 0.84 BWI76_RS20440 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.77 BWI76_RS24285 cystathionine beta-lyase 0.54 40
Rahnella sp. WP5 0.84 EX31_RS19690 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.81 EX31_RS08025 cystathionine beta-lyase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF1951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.77 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) low > 78
Escherichia fergusonii Becca 0.82 EFB2_01528 50S ribosomal protein L3 glutamine methyltransferase 0.77 EFB2_00802 Cystathionine beta-lyase MetC low > 86
Escherichia coli BW25113 0.82 b2330 yfcB putative adenine-specific methylase (VIMSS) 0.77 b3008 metC cystathionine beta-lyase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_01375 50S ribosomal protein L3 glutamine methyltransferase 0.78 OHPLBJKB_00693 Cystathionine beta-lyase MetC low > 73
Escherichia coli ECRC102 0.82 NIAGMN_20385 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.77 NIAGMN_16725 metC cystathionine beta-lyase — —
Escherichia coli ECRC100 0.82 OKFHMN_22610 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.77 OKFHMN_18960 metC cystathionine beta-lyase low > 80
Escherichia coli ECRC98 0.82 JDDGAC_26570 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.77 JDDGAC_22595 metC cystathionine beta-lyase low > 86
Escherichia coli Nissle 1917 0.82 ECOLIN_RS13495 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.78 ECOLIN_RS17315 cystathionine beta-lyase low > 55
Escherichia coli ECRC99 0.82 KEDOAH_05585 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.77 KEDOAH_09185 metC cystathionine beta-lyase — —
Escherichia coli ECRC101 0.82 MCAODC_13650 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.77 MCAODC_09475 metC cystathionine beta-lyase low > 87
Escherichia coli BL21 0.82 ECD_02255 N5-glutamine methyltransferase 0.77 ECD_02881 cystathionine beta-lyase, PLP-dependent low > 61
Erwinia tracheiphila SCR3 0.82 LU632_RS07770 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.73 LU632_RS20545 metC cystathionine beta-lyase low > 74
Escherichia coli ECOR38 0.82 HEPCGN_21815 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.77 HEPCGN_17825 metC cystathionine beta-lyase low > 87
Pantoea sp. MT58 0.82 IAI47_06145 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.73 IAI47_03215 cystathionine beta-lyase low > 76
Escherichia coli ECRC62 0.82 BNILDI_13165 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.78 BNILDI_00780 metC cystathionine beta-lyase 0.77 25
Escherichia coli ECOR27 0.81 NOLOHH_14245 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.78 NOLOHH_10735 metC cystathionine beta-lyase low > 75
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_10570 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.65 CSW01_08400 cystathionine beta-lyase low > 62
Shewanella loihica PV-4 0.64 Shew_2417 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.56 Shew_1789 cystathionine beta-lyase (RefSeq) 0.47 24
Shewanella amazonensis SB2B 0.63 Sama_2160 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.53 Sama_2008 cystathionine beta-lyase (RefSeq) low > 62
Shewanella sp. ANA-3 0.63 Shewana3_1468 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) 0.54 Shewana3_2414 cystathionine beta-lyase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.60 SO3080 hemK family protein (NCBI ptt file) 0.54 SO2191 metC cystathionine beta-lyase (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_02265 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.38 AO353_24330 cystathionine beta-lyase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1850 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.34 Psyr_0607 cystathionine beta-lyase low > 86
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1850 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.34 Psyr_0607 cystathionine beta-lyase low > 86
Acinetobacter radioresistens SK82 0.46 MPMX26_01339 50S ribosomal protein L3 glutamine methyltransferase 0.22 MPMX26_02724 Cystathionine beta-lyase low > 36
Castellaniella sp019104865 MT123 0.45 ABCV34_RS05175 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.30 ABCV34_RS12385 PLP-dependent aspartate aminotransferase family protein low > 48
Azospirillum brasilense Sp245 0.44 AZOBR_RS10950 SAM-dependent methyltransferase 0.43 AZOBR_RS08650 cystathionine beta-lyase low > 97
Azospirillum sp. SherDot2 0.43 MPMX19_00751 50S ribosomal protein L3 glutamine methyltransferase 0.39 MPMX19_01339 Cystathionine beta-lyase MetC low > 112
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS06350 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.35 QEN71_RS22165 cystathionine beta-lyase low > 153
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS10785 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.30 HSERO_RS14995 cystathionine beta-lyase low > 78
Ralstonia solanacearum UW163 0.42 UW163_RS13620 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.35 UW163_RS18620 cystathionine beta-lyase — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS00290 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.35 RALBFv3_RS20555 cystathionine beta-lyase low > 76
Ralstonia solanacearum GMI1000 0.41 RS_RS06960 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.32 RS_RS08260 cystathionine beta-lyase low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS17185 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.35 RPSI07_RS02185 cystathionine beta-lyase low > 81
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11740 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.36 ABZR87_RS11250 cystathionine beta-lyase low > 80
Rhodopseudomonas palustris CGA009 0.40 TX73_005990 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.39 TX73_013235 cystathionine beta-lyase low > 86
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS12205 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.35 BPHYT_RS09190 cystathionine beta-lyase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_00596 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.34 H281DRAFT_00859 cystathionine beta-lyase low > 103
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS11955 SAM-dependent methyltransferase 0.33 RR42_RS07655 cystathionine beta-lyase low > 128
Variovorax sp. SCN45 0.36 GFF258 Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298) 0.34 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) low > 127
Variovorax sp. OAS795 0.35 ABID97_RS16650 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.34 ABID97_RS22430 cystathionine beta-lyase low > 91
Acidovorax sp. GW101-3H11 0.34 Ac3H11_2299 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.25 Ac3H11_4146 Cystathionine beta-lyase (EC 4.4.1.8) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF4549 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.39 GFF5026 Cystathionine beta-lyase (EC 4.4.1.8) low > 90

Not shown: 22 genomes with orthologs for HER17_RS06930 only; 10 genomes with orthologs for HER17_RS19690 only