Conservation of cofitness between HER17_RS14920 and HER17_RS00410 in Pectobacterium carotovorum WPP14

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS14920 ADP-forming succinate--CoA ligase subunit beta 1.0 HER17_RS00410 sugar kinase 0.59 7
Dickeya dadantii 3937 0.93 DDA3937_RS06470 ADP-forming succinate--CoA ligase subunit beta 0.87 DDA3937_RS00580 2-dehydro-3-deoxygluconokinase — —
Dickeya dianthicola 67-19 0.92 HGI48_RS06510 ADP-forming succinate--CoA ligase subunit beta 0.86 HGI48_RS20810 2-dehydro-3-deoxygluconokinase 0.59 22
Dickeya dianthicola ME23 0.92 DZA65_RS06855 ADP-forming succinate--CoA ligase subunit beta 0.86 DZA65_RS21825 sugar kinase 0.81 11
Serratia liquefaciens MT49 0.91 IAI46_06285 ADP-forming succinate--CoA ligase subunit beta 0.78 IAI46_24320 sugar kinase low > 86
Pantoea sp. MT58 0.91 IAI47_13735 ADP-forming succinate--CoA ligase subunit beta 0.72 IAI47_18565 sugar kinase — —
Erwinia tracheiphila SCR3 0.90 LU632_RS16085 sucC ADP-forming succinate--CoA ligase subunit beta 0.71 LU632_RS00390 sugar kinase — —
Klebsiella michiganensis M5al 0.90 BWI76_RS08425 succinyl-CoA ligase subunit beta 0.77 BWI76_RS26750 PfkB domain-containing protein low > 92
Escherichia coli ECOR38 0.90 HEPCGN_01315 sucC ADP-forming succinate--CoA ligase subunit beta 0.77 HEPCGN_15110 kdgK 2-dehydro-3-deoxygluconokinase low > 87
Escherichia coli ECOR27 0.90 NOLOHH_23305 sucC ADP-forming succinate--CoA ligase subunit beta 0.77 NOLOHH_08170 kdgK 2-dehydro-3-deoxygluconokinase low > 75
Escherichia coli ECRC101 0.90 MCAODC_26135 sucC ADP-forming succinate--CoA ligase subunit beta 0.76 MCAODC_06720 kdgK 2-dehydro-3-deoxygluconokinase low > 87
Escherichia coli ECRC62 0.90 BNILDI_21300 sucC ADP-forming succinate--CoA ligase subunit beta 0.77 BNILDI_03385 kdgK 2-dehydro-3-deoxygluconokinase low > 75
Escherichia coli ECRC98 0.90 JDDGAC_10570 sucC ADP-forming succinate--CoA ligase subunit beta 0.76 JDDGAC_19835 kdgK 2-dehydro-3-deoxygluconokinase low > 86
Escherichia fergusonii Becca 0.90 EFB2_03378 Succinate--CoA ligase [ADP-forming] subunit beta 0.76 EFB2_00282 2-dehydro-3-deoxygluconokinase low > 86
Escherichia coli ECRC99 0.90 KEDOAH_21050 sucC ADP-forming succinate--CoA ligase subunit beta 0.76 KEDOAH_11945 kdgK 2-dehydro-3-deoxygluconokinase — —
Escherichia coli ECRC100 0.90 OKFHMN_06915 sucC ADP-forming succinate--CoA ligase subunit beta 0.76 OKFHMN_16205 kdgK 2-dehydro-3-deoxygluconokinase 0.72 20
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_02989 Succinate--CoA ligase [ADP-forming] subunit beta 0.77 OHPLBJKB_00176 2-dehydro-3-deoxygluconokinase low > 73
Escherichia coli BW25113 0.90 b0728 sucC succinyl-CoA synthetase subunit beta (NCBI) 0.77 b3526 kdgK ketodeoxygluconokinase (VIMSS) low > 76
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03880 ADP-forming succinate--CoA ligase subunit beta 0.76 ECOLIN_RS20170 2-dehydro-3-deoxygluconokinase — —
Escherichia coli BL21 0.90 ECD_00687 succinyl-CoA synthetase, beta subunit 0.76 ECD_03374 2-dehydro-3-deoxygluconokinase low > 61
Escherichia coli ECRC102 0.90 NIAGMN_04965 sucC ADP-forming succinate--CoA ligase subunit beta 0.76 NIAGMN_13970 kdgK 2-dehydro-3-deoxygluconokinase — —
Rahnella sp. WP5 0.89 EX31_RS23450 ADP-forming succinate--CoA ligase subunit beta 0.80 EX31_RS05435 sugar kinase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF4641 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.77 GFF497 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_01356 Succinate--CoA ligase [ADP-forming] subunit beta 0.75 MPMX20_04411 2-dehydro-3-deoxygluconokinase low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_2264 succinyl-CoA synthetase, beta subunit 0.76 EX28DRAFT_4051 Sugar kinases, ribokinase family low > 76
Pseudomonas fluorescens SBW25 0.77 PFLU_RS08970 ADP-forming succinate--CoA ligase subunit beta 0.45 PFLU_RS12820 sugar kinase — —
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS08970 ADP-forming succinate--CoA ligase subunit beta 0.45 PFLU_RS12820 sugar kinase — —
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_4266 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.45 PfGW456L13_2869 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) — —
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_01820 succinyl-CoA synthetase subunit beta 0.45 AO353_21745 ketodeoxygluconokinase — —
Pseudomonas sp. RS175 0.77 PFR28_03093 Succinate--CoA ligase [ADP-forming] subunit beta 0.42 PFR28_01390 2-dehydro-3-deoxygluconokinase — —
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_19710 succinyl-CoA synthetase subunit beta 0.44 AO356_28555 ketodeoxygluconokinase — —
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_5858 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.45 Pf6N2E2_2046 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) — —
Pseudomonas simiae WCS417 0.77 PS417_08910 succinyl-CoA synthetase subunit beta 0.45 PS417_12130 ketodeoxygluconokinase — —
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_3684 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.46 Pf1N1B4_5638 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.76 Psyr_2012 succinyl-CoA synthetase (ADP-forming) beta subunit 0.47 Psyr_2510 2-keto-3-deoxygluconate kinase — —
Pseudomonas syringae pv. syringae B728a 0.76 Psyr_2012 succinyl-CoA synthetase (ADP-forming) beta subunit 0.47 Psyr_2510 2-keto-3-deoxygluconate kinase — —
Alteromonas macleodii MIT1002 0.75 MIT1002_01950 Succinyl-CoA ligase [ADP-forming] subunit beta 0.31 MIT1002_03302 2-dehydro-3-deoxygluconokinase — —
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS11025 ADP-forming succinate--CoA ligase subunit beta 0.17 ABZR86_RS12620 sugar kinase — —
Azospirillum sp. SherDot2 0.55 MPMX19_00106 Succinate--CoA ligase [ADP-forming] subunit beta 0.43 MPMX19_05795 2-dehydro-3-deoxygluconokinase — —
Azospirillum brasilense Sp245 0.55 AZOBR_RS14065 malate--CoA ligase subunit beta 0.43 AZOBR_RS29860 ketodeoxygluconokinase low > 97
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS20405 ADP-forming succinate--CoA ligase subunit beta 0.15 QEN71_RS22180 sugar kinase low > 153
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS31375 succinyl-CoA synthetase subunit beta 0.17 RR42_RS28860 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) (from data) low > 128
Caulobacter crescentus NA1000 0.54 CCNA_00340 succinyl-CoA synthetase beta chain 0.30 CCNA_01110 2-dehydro-3-deoxygluconokinase — —
Caulobacter crescentus NA1000 Δfur 0.54 CCNA_00340 succinyl-CoA synthetase beta chain 0.30 CCNA_01110 2-dehydro-3-deoxygluconokinase — —
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_04205 succinyl-CoA synthetase (ADP-forming) beta subunit 0.16 H281DRAFT_00856 2-keto-3-deoxygluconate kinase — —
Sinorhizobium meliloti 1021 0.49 SMc02480 succinyl-CoA synthetase subunit beta 0.30 SMc01531 2-dehydro-3-deoxygluconokinase — —
Acidovorax sp. GW101-3H11 0.49 Ac3H11_1252 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.17 Ac3H11_700 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) — —
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS16345 succinyl-CoA ligase [ADP-forming] subunit beta 0.16 BPHYT_RS09175 2-dehydro-3-deoxygluconokinase low > 109
Ralstonia solanacearum UW163 0.48 UW163_RS01610 ADP-forming succinate--CoA ligase subunit beta 0.17 UW163_RS20940 sugar kinase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS12025 ADP-forming succinate--CoA ligase subunit beta 0.17 RALBFv3_RS18190 sugar kinase low > 76
Ralstonia solanacearum GMI1000 0.48 RS_RS02775 succinyl-CoA ligase subunit beta 0.16 RS_RS22845 sugar kinase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF2504 Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) 0.19 GFF178 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) — —
Ralstonia solanacearum PSI07 0.48 RPSI07_RS21245 ADP-forming succinate--CoA ligase subunit beta 0.16 RPSI07_RS05445 sugar kinase low > 81
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS07980 ADP-forming succinate--CoA ligase subunit beta 0.17 ABZR87_RS19120 sugar kinase — —
Rhizobium sp. OAE497 0.48 ABIE40_RS17995 ADP-forming succinate--CoA ligase subunit beta 0.31 ABIE40_RS13595 sugar kinase — —
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS03280 malate--CoA ligase subunit beta 0.17 HSERO_RS08715 2-dehydro-3-deoxygluconokinase — —
Agrobacterium fabrum C58 0.47 Atu2638 succinyl-CoA synthetase beta chain 0.27 Atu2296 2-dehydro-3-deoxygluconokinase — —
Bacteroides ovatus ATCC 8483 0.44 BACOVA_02527 succinate-CoA ligase, beta subunit 0.10 BACOVA_03830 kinase, PfkB family low > 94

Not shown: 38 genomes with orthologs for HER17_RS14920 only; 2 genomes with orthologs for HER17_RS00410 only