Conservation of cofitness between Psest_1242 and Psest_0932 in Pseudomonas stutzeri RCH2

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 1.0 Psest_0932 Transcriptional regulator 0.23 20
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_1228 tRNA-guanine transglycosylase 0.58 Psyr_2754 regulatory protein, TetR
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_1228 tRNA-guanine transglycosylase 0.58 Psyr_2754 regulatory protein, TetR
Pseudomonas fluorescens SBW25 0.90 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.23 PFLU_RS15465 TetR/AcrR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.23 PFLU_RS15465 TetR/AcrR family transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.90 PS417_23245 queuine tRNA-ribosyltransferase 0.19 PS417_11180 TetR family transcriptional regulator
Pseudomonas putida KT2440 0.89 PP_0833 queuine tRNA-ribosyltransferase 0.22 PP_2475 Transcriptional regulator, TetR family low > 96
Marinobacter adhaerens HP15 0.78 HP15_1479 queuine tRNA-ribosyltransferase 0.54 HP15_3141 transcriptional regulator, TetR family low > 73
Kangiella aquimarina DSM 16071 0.74 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.19 B158DRAFT_0454 transcriptional regulator, TetR family low > 40
Enterobacter sp. TBS_079 0.73 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.21 MPMX20_01987 HTH-type transcriptional repressor NemR low > 85
Rahnella sp. WP5 0.73 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.51 EX31_RS11215 TetR family transcriptional regulator low > 89
Enterobacter asburiae PDN3 0.73 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.21 EX28DRAFT_1647 transcriptional regulator, TetR family 0.56 67
Klebsiella michiganensis M5al 0.73 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.45 BWI76_RS12400 TetR family transcriptional regulator
Shewanella sp. ANA-3 0.73 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.20 Shewana3_0262 TetR family transcriptional regulator (RefSeq) low > 73
Acinetobacter radioresistens SK82 0.73 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.42 MPMX26_00866 Transcriptional regulator AcuR low > 36
Shewanella oneidensis MR-1 0.72 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) 0.21 SO4468 transcriptional regulator, TetR family (NCBI ptt file) low > 76
Escherichia coli ECRC99 0.72 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.21 KEDOAH_00670 nemR DNA-binding transcriptional regulator NemR
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.20 OHPLBJKB_02076 HTH-type transcriptional repressor NemR low > 73
Escherichia coli ECOR38 0.72 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.21 HEPCGN_05825 nemR DNA-binding transcriptional regulator NemR low > 85
Escherichia coli Nissle 1917 0.72 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.20 ECOLIN_RS09195 DNA-binding transcriptional regulator NemR
Escherichia coli ECRC101 0.72 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.21 MCAODC_17970 nemR DNA-binding transcriptional regulator NemR
Escherichia coli ECOR27 0.72 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.20 NOLOHH_17960 nemR DNA-binding transcriptional regulator NemR low > 57
Escherichia coli BL21 0.72 ECD_00354 tRNA-guanine transglycosylase 0.20 ECD_01619 transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated low > 60
Escherichia coli BW25113 0.72 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.20 b1649 ydhM predicted DNA-binding transcriptional regulator (RefSeq)
Escherichia coli ECRC62 0.72 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.20 BNILDI_16750 nemR DNA-binding transcriptional regulator NemR
Escherichia coli ECRC98 0.72 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.21 JDDGAC_02030 nemR DNA-binding transcriptional regulator NemR
Escherichia coli ECRC102 0.72 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.21 NIAGMN_00625 nemR DNA-binding transcriptional regulator NemR
Escherichia coli ECRC101 0.72 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.21 OKFHMN_27440 nemR DNA-binding transcriptional regulator NemR
Escherichia fergusonii Becca 0.72 EFB2_03651 Queuine tRNA-ribosyltransferase 0.20 EFB2_02343 HTH-type transcriptional repressor NemR low > 86
Pantoea sp. MT58 0.71 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.24 IAI47_10760 TetR/AcrR family transcriptional regulator low > 76
Dechlorosoma suillum PS 0.68 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.19 Dsui_1876 transcriptional regulator low > 51
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt 0.26 ABZR86_RS19675 TetR/AcrR family transcriptional regulator low > 74
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.22 HSERO_RS18905 TetR family transcriptional regulator low > 78
Castellaniella sp019104865 MT123 0.64 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.12 ABCV34_RS01280 TetR/AcrR family transcriptional regulator low > 48
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS17400 queuine tRNA-ribosyltransferase 0.15 RR42_RS11290 TetR family transcriptional regulator low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.16 GFF2489 Transcriptional regulator, TetR family low > 90
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS03410 queuine tRNA-ribosyltransferase 0.21 BPHYT_RS20385 TetR family transcriptional regulator low > 109
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_04670 tRNA-guanine transglycosylase 0.45 H281DRAFT_05520 transcriptional regulator, TetR family low > 103
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.31 RALBFv3_RS20600 TetR family transcriptional regulator low > 76
Variovorax sp. SCN45 0.59 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 0.51 GFF4224 Transcriptional regulator, AcrR family low > 127
Variovorax sp. OAS795 0.59 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.53 ABID97_RS13270 TetR/AcrR family transcriptional regulator low > 91
Rhodospirillum rubrum S1H 0.54 Rru_A0280 Queuine tRNA-ribosyltransferase (NCBI) 0.15 Rru_A0888 Transcriptional Regulator, TetR family (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.54 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 0.21 PGA1_c30430 transcriptional regulator, TetR family low > 62
Magnetospirillum magneticum AMB-1 0.52 AMB_RS03090 tRNA guanosine(34) transglycosylase Tgt 0.15 AMB_RS09490 TetR/AcrR family transcriptional regulator low > 64
Desulfovibrio vulgaris Miyazaki F 0.52 DvMF_2757 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.28 DvMF_3038 transcriptional regulator, TetR family (RefSeq)
Azospirillum brasilense Sp245 0.51 AZOBR_RS06295 queuine tRNA-ribosyltransferase 0.17 AZOBR_RS19605 TetR family transcriptional regulator low > 97
Agrobacterium fabrum C58 0.49 Atu1677 queuine tRNA-ribosyltransferase 0.19 Atu0993 transcriptional regulator, TetR family low > 89

Not shown: 53 genomes with orthologs for Psest_1242 only; 1 genomes with orthologs for Psest_0932 only