Conservation of cofitness between PS417_20050 and PS417_26370 in Pseudomonas simiae WCS417

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_20050 cobalamin biosynthesis protein CobD 1.0 PS417_26370 RNA helicase 0.20 16
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS22015 cobalamin biosynthesis protein 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA low > 109
Pseudomonas fluorescens SBW25 0.98 PFLU_RS22015 cobalamin biosynthesis protein 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA low > 109
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_3709 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) 0.93 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA low > 87
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_02625 cobalamin biosynthesis protein CobD 0.91 AO353_07850 ATP-dependent RNA helicase low > 101
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_4240 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) 0.93 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA low > 87
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_3678 adenosylcobinamide-phosphate synthase 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_3678 adenosylcobinamide-phosphate synthase 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_5740 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) 0.95 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA low > 103
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_19150 cobalamin biosynthesis protein CobD 0.95 AO356_13770 ATP-dependent RNA helicase low > 104
Pseudomonas sp. RS175 0.84 PFR28_03206 Cobalamin biosynthesis protein CobD 0.94 PFR28_04172 ATP-dependent RNA helicase DbpA low > 88
Pseudomonas putida KT2440 0.84 PP_1675 Subunit of adenosylcobinamide-phosphate synthase beta component 0.85 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA low > 96
Pseudomonas sp. S08-1 0.70 OH686_04975 cobalamin biosynthesis protein CobD 0.74 OH686_14770 ATP-dependent 23S rRNA helicase DbpA low > 80
Pseudomonas stutzeri RCH2 0.65 Psest_3010 cobalamin biosynthesis protein CobD 0.84 Psest_0344 Superfamily II DNA and RNA helicases low > 67
Lysobacter sp. OAE881 0.53 ABIE51_RS04955 adenosylcobinamide-phosphate synthase CbiB 0.50 ABIE51_RS14930 ATP-dependent RNA helicase DbpA low > 62
Dechlorosoma suillum PS 0.52 Dsui_0541 cobalamin biosynthesis protein CobD 0.57 Dsui_2946 DNA/RNA helicase, superfamily II low > 51
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_05490 cbiB adenosylcobinamide-phosphate synthase CbiB 0.52 OKGIIK_16320 dbpA ATP-dependent RNA helicase DbpA low > 52
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS10910 adenosylcobinamide-phosphate synthase CbiB 0.54 ABZR86_RS05195 ATP-dependent RNA helicase DbpA low > 74
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS25105 adenosylcobinamide-phosphate synthase CbiB 0.59 QEN71_RS00065 ATP-dependent RNA helicase DbpA low > 153
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1395.1 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) 0.50 Xcc-8004.2274.1 ATP-dependent 23S rRNA helicase DbpA 0.28 50
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS04890 cobalamin biosynthesis protein CobD 0.58 BPHYT_RS00150 DEAD/DEAH box helicase low > 109
Ralstonia solanacearum PSI07 0.50 RPSI07_RS12915 cobalamin biosynthesis protein 0.59 RPSI07_RS20905 ATP-dependent RNA helicase DbpA low > 81
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS00050 adenosylcobinamide-phosphate synthase CbiB 0.58 ABZR87_RS19855 ATP-dependent RNA helicase DbpA low > 80
Ralstonia solanacearum GMI1000 0.47 RS_RS12010 cobalamin biosynthesis protein 0.59 RS_RS03120 ATP-dependent RNA helicase DbpA low > 80
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_00144 adenosylcobinamide-phosphate synthase (EC 6.3.1.10) 0.58 H281DRAFT_02294 ATP-dependent RNA helicase DbpA — —
Paraburkholderia graminis OAS925 0.47 ABIE53_001253 adenosylcobinamide-phosphate synthase 0.58 ABIE53_000368 ATP-independent RNA helicase DbpA low > 113
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS16085 cobalamin biosynthesis protein CobD 0.58 RR42_RS00295 DEAD/DEAH box helicase low > 128
Klebsiella michiganensis M5al 0.25 BWI76_RS23085 adenosylcobinamide-phosphate synthase 0.53 BWI76_RS12705 ATP-dependent RNA helicase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF3951 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) 0.52 GFF2649 ATP-dependent 23S rRNA helicase DbpA low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.23 GFF3996 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) 0.60 GFF5449 ATP-dependent 23S rRNA helicase DbpA low > 90
Variovorax sp. SCN45 0.21 GFF439 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) 0.55 GFF7138 ATP-dependent 23S rRNA helicase DbpA low > 127
Variovorax sp. OAS795 0.21 ABID97_RS17390 adenosylcobinamide-phosphate synthase CbiB 0.58 ABID97_RS02340 ATP-dependent RNA helicase DbpA low > 91
Shewanella amazonensis SB2B 0.18 Sama_0854 CobD-related protein (RefSeq) 0.53 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.15 CSW01_12050 adenosylcobinamide-phosphate synthase 0.51 CSW01_12980 ATP-dependent RNA helicase DbpA low > 62
Shewanella sp. ANA-3 0.13 Shewana3_3053 cobalamin biosynthesis protein CbiB (RefSeq) 0.53 Shewana3_3384 ATP-dependent RNA helicase DbpA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.13 SO1321 CobD-related protein (NCBI ptt file) 0.53 SO0897 dbpA ATP-dependent RNA helicase DbpA (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.12 Shew_1026 cobalamin biosynthesis protein CbiB (RefSeq) 0.53 Shew_0598 ATP-dependent RNA helicase DbpA (RefSeq) low > 60

Not shown: 25 genomes with orthologs for PS417_20050 only; 31 genomes with orthologs for PS417_26370 only