| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_19995 | | Long-chain fatty acid transport protein | 1.0 | PS417_24705 | | D-alanyl-D-alanine carboxypeptidase | 0.32 | 16 |
| Pseudomonas fluorescens SBW25-INTG | 0.86 | PFLU_RS21965 | | transporter | 1.00 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.86 | PFLU_RS21965 | | transporter | 1.00 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.74 | AO356_19200 | | Long-chain fatty acid transport protein | 0.90 | AO356_15330 | | D-alanyl-D-alanine carboxypeptidase | low | > 104 |
| Pseudomonas sp. RS175 | 0.74 | PFR28_03194 | | Long-chain fatty acid transport protein | 0.90 | PFR28_03864 | | D-alanyl-D-alanine carboxypeptidase DacC | 0.50 | 54 |
| Pseudomonas fluorescens FW300-N2E3 | 0.73 | AO353_02580 | | Long-chain fatty acid transport protein | 0.91 | AO353_06455 | | D-alanyl-D-alanine carboxypeptidase | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.73 | Pf6N2E2_5754 | | Long-chain fatty acid transport protein | 0.90 | Pf6N2E2_5001 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.65 | Pf1N1B4_3720 | | Long-chain fatty acid transport protein | 0.91 | Pf1N1B4_2696 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.64 | PfGW456L13_4229 | | Long-chain fatty acid transport protein | 0.91 | PfGW456L13_1364 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas putida KT2440 | 0.59 | PP_1689 | | putative Long-chain fatty acid transporter | 0.91 | PP_4803 | | D-alanyl-D-alanine carboxypeptidase | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_3669 | | Membrane protein involved in aromatic hydrocarbon degradation | 0.90 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_3669 | | Membrane protein involved in aromatic hydrocarbon degradation | 0.90 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.55 | Psest_2997 | | Long-chain fatty acid transport protein | 0.79 | Psest_0516 | | D-alanyl-D-alanine carboxypeptidase | 0.38 | 24 |
| Pseudomonas sp. S08-1 | 0.48 | OH686_04915 | | Long-chain fatty acid transport protein | 0.75 | OH686_09300 | | D-alanyl-D-alanine carboxypeptidase | low | > 80 |
| Azospirillum sp. SherDot2 | 0.23 | MPMX19_00681 | | 47 kDa outer membrane protein | 0.37 | MPMX19_05873 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 112 |
| Castellaniella sp019104865 MT123 | 0.23 | ABCV34_RS11395 | | porin | 0.41 | ABCV34_RS13340 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 48 |
| Shewanella sp. ANA-3 | 0.23 | Shewana3_3757 | | membrane protein involved in aromatic hydrocarbon degradation (RefSeq) | 0.44 | Shewana3_0991 | | penicillin-binding protein 6 (RefSeq) | low | > 73 |
| Rhodospirillum rubrum S1H | 0.22 | Rru_A1313 | | Membrane protein involved in aromatic hydrocarbon degradation (NCBI) | 0.36 | Rru_A1704 | | Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) | — | — |
| Dechlorosoma suillum PS | 0.22 | Dsui_0321 | | long-chain fatty acid transport protein | 0.48 | Dsui_0899 | | D-alanyl-D-alanine carboxypeptidase | low | > 51 |
| Alteromonas macleodii MIT1002 | 0.21 | MIT1002_03890 | | Outer membrane flp protein | 0.44 | MIT1002_01848 | | D-alanyl-D-alanine carboxypeptidase DacC precursor | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.21 | CSW01_18440 | | long-chain fatty acid transporter | 0.46 | CSW01_04845 | | D-alanyl-D-alanine carboxypeptidase | low | > 62 |
| Rahnella sp. WP5 | 0.20 | EX31_RS19720 | | long-chain fatty acid transporter FadL | 0.43 | EX31_RS23105 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 89 |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS10410 | | long-chain fatty acid transporter | 0.33 | AZOBR_RS08775 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Shewanella amazonensis SB2B | 0.20 | Sama_0339 | | membrane protein involved in aromatic hydrocarbon degradation (RefSeq) | 0.43 | Sama_2592 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.20 | SO4232 | | long-chain fatty acid transport protein (NCBI ptt file) | 0.44 | SO1164 | dacA-1 | D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) | — | — |
| Shewanella loihica PV-4 | 0.20 | Shew_3468 | | membrane protein involved in aromatic hydrocarbon degradation (RefSeq) | 0.45 | Shew_2939 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | low | > 60 |
| Dickeya dianthicola 67-19 | 0.20 | HGI48_RS14565 | | long-chain fatty acid transporter FadL | 0.43 | HGI48_RS09435 | | serine hydrolase | low | > 71 |
| Pantoea sp. MT58 | 0.20 | IAI47_06115 | | long-chain fatty acid transporter FadL | 0.43 | IAI47_13090 | | serine hydrolase | low | > 76 |
| Dickeya dianthicola ME23 | 0.20 | DZA65_RS15505 | | long-chain fatty acid transporter FadL | 0.43 | DZA65_RS09745 | | D-alanyl-D-alanine carboxypeptidase | low | > 75 |
| Lysobacter sp. OAE881 | 0.19 | ABIE51_RS19235 | | outer membrane protein transport protein | 0.48 | ABIE51_RS03165 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 62 |
| Serratia liquefaciens MT49 | 0.19 | IAI46_18060 | | long-chain fatty acid transporter FadL | 0.43 | IAI46_05915 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.19 | HER17_RS06875 | | long-chain fatty acid transporter FadL | 0.45 | HER17_RS12545 | | serine hydrolase | low | > 75 |
| Escherichia coli Nissle 1917 | 0.19 | ECOLIN_RS13565 | | long-chain fatty acid transporter FadL | 0.42 | ECOLIN_RS04460 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia fergusonii Becca | 0.19 | EFB2_01515 | | Long-chain fatty acid transport protein | 0.43 | EFB2_03267 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 86 |
| Dickeya dadantii 3937 | 0.19 | DDA3937_RS14615 | | long-chain fatty acid transporter FadL | 0.43 | DDA3937_RS09420 | | serine hydrolase | low | > 74 |
| Marinobacter adhaerens HP15 | 0.19 | HP15_291 | | membrane protein involved in aromatic hydrocarbon degradation | 0.53 | HP15_608 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Erwinia tracheiphila SCR3 | 0.19 | LU632_RS07305 | fadL | long-chain fatty acid transporter FadL | 0.43 | LU632_RS16390 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.18 | GFF1957 | | Long-chain fatty acid transport protein | 0.41 | GFF4545 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | 0.54 | 5 |
| Enterobacter asburiae PDN3 | 0.18 | EX28DRAFT_0268 | | Long-chain fatty acid transport protein | 0.42 | EX28DRAFT_2127 | | D-alanyl-D-alanine carboxypeptidase | low | > 76 |
| Enterobacter sp. TBS_079 | 0.17 | MPMX20_03271 | | Long-chain fatty acid transport protein | 0.42 | MPMX20_01477 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 85 |
| Klebsiella michiganensis M5al | 0.17 | BWI76_RS20470 | | long-chain fatty acid transporter | 0.44 | BWI76_RS09145 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 92 |
| Escherichia coli ECRC98 | 0.16 | JDDGAC_26505 | fadL | long-chain fatty acid transporter FadL | 0.42 | JDDGAC_09675 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 86 |
| Escherichia coli BW25113 | 0.16 | b2344 | fadL | long-chain fatty acid outer membrane transporter (RefSeq) | 0.43 | b0839 | dacC | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.16 | BNILDI_13095 | fadL | long-chain fatty acid transporter FadL | 0.42 | BNILDI_20670 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 75 |
| Escherichia coli ECRC102 | 0.16 | NIAGMN_20320 | fadL | long-chain fatty acid transporter FadL | 0.42 | NIAGMN_04085 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli ECOR27 | 0.16 | NOLOHH_14180 | fadL | long-chain fatty acid transporter FadL | 0.42 | NOLOHH_22410 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 75 |
| Escherichia coli ECRC101 | 0.16 | MCAODC_13575 | fadL | long-chain fatty acid transporter FadL | 0.42 | MCAODC_25255 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 87 |
| Escherichia coli BL21 | 0.16 | ECD_02268 | | long-chain fatty acid outer membrane transporter | 0.43 | ECD_00806 | | D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a | low | > 61 |
| Escherichia coli ECRC100 | 0.16 | OKFHMN_22545 | fadL | long-chain fatty acid transporter FadL | 0.42 | OKFHMN_06040 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 80 |
| Escherichia coli ECOR38 | 0.16 | HEPCGN_21740 | fadL | long-chain fatty acid transporter FadL | 0.42 | HEPCGN_01990 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 87 |
| Escherichia coli ECRC99 | 0.16 | KEDOAH_05650 | fadL | long-chain fatty acid transporter FadL | 0.42 | KEDOAH_21870 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.16 | OHPLBJKB_01362 | | Long-chain fatty acid transport protein | 0.43 | OHPLBJKB_02871 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 73 |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS19190 | | outer membrane protein transport protein | 0.35 | ABIE41_RS15965 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |